SRR3548747_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548747_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	656115
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	4411	0.6722906807495637	No Hit
AATCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	3547	0.5406064485646571	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3458	0.5270417533511655	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCC	3187	0.4857380184876127	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGT	2825	0.4305647637990291	No Hit
AAACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	1327	0.20225112975621654	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTT	943	0.14372480434070245	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	935	0.14250550589454594	No Hit
AATGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC	933	0.1422006812830068	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	792	0.12071054616949771	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATGCGG	75	0.0	45.000004	2
TACGAGA	35	1.2108649E-7	45.000004	19
ATCCCAT	35	1.2108649E-7	45.000004	17
CGTACAG	70	0.0	45.000004	1
ACGTCCT	35	1.2108649E-7	45.000004	10
CACGTGC	35	1.2108649E-7	45.000004	17
CAATACG	35	1.2108649E-7	45.000004	1
TCAACGG	75	0.0	45.000004	2
TGATCGG	25	3.888969E-5	45.0	2
TCTGCGC	25	3.888969E-5	45.0	12
CTTCGTT	20	7.031071E-4	45.0	21
AACCGTA	20	7.031071E-4	45.0	32
AACGTAG	20	7.031071E-4	45.0	30
AGACTCG	25	3.888969E-5	45.0	14
TCGCAAT	20	7.031071E-4	45.0	11
CGAGTTT	20	7.031071E-4	45.0	7
TACCAAC	20	7.031071E-4	45.0	17
CCGATAG	20	7.031071E-4	45.0	1
ACGCAAC	25	3.888969E-5	45.0	45
ACCGCAA	25	3.888969E-5	45.0	31