##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548747_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 656115 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.198416436143056 31.0 31.0 34.0 28.0 34.0 2 31.39498563514018 31.0 31.0 34.0 28.0 34.0 3 31.34588905908263 31.0 31.0 34.0 28.0 34.0 4 35.37416306592594 37.0 35.0 37.0 33.0 37.0 5 35.0567903492528 37.0 35.0 37.0 32.0 37.0 6 35.117445874579914 37.0 35.0 37.0 32.0 37.0 7 35.07868132873048 37.0 35.0 37.0 32.0 37.0 8 35.43892305464743 37.0 35.0 37.0 33.0 37.0 9 35.89052528901183 39.0 37.0 39.0 32.0 39.0 10 35.65499188404472 38.0 35.0 39.0 30.0 39.0 11 36.0745265692752 38.0 35.0 39.0 31.0 39.0 12 35.796840492901396 37.0 35.0 39.0 31.0 39.0 13 35.53399632686343 37.0 35.0 39.0 30.0 39.0 14 36.55101925729483 38.0 35.0 40.0 31.0 41.0 15 36.679169048108946 38.0 35.0 40.0 31.0 41.0 16 36.70787895414676 38.0 35.0 40.0 31.0 41.0 17 36.65120748649246 38.0 35.0 40.0 31.0 41.0 18 36.50227627778667 38.0 35.0 40.0 31.0 41.0 19 36.56762762625454 38.0 35.0 40.0 31.0 41.0 20 36.54112465040427 38.0 35.0 40.0 31.0 41.0 21 36.519529350799786 38.0 35.0 40.0 31.0 41.0 22 36.485564268459036 38.0 35.0 40.0 31.0 41.0 23 36.44358839532704 38.0 35.0 40.0 31.0 41.0 24 36.12068006370834 38.0 34.0 40.0 30.0 41.0 25 36.186695929829376 38.0 35.0 40.0 30.0 41.0 26 36.112798823377 38.0 35.0 40.0 30.0 41.0 27 36.000365789533845 38.0 34.0 40.0 30.0 41.0 28 35.76699206693949 38.0 34.0 40.0 29.0 41.0 29 35.33645930972467 38.0 34.0 40.0 27.0 41.0 30 35.38511389009549 38.0 34.0 40.0 27.0 41.0 31 35.24057825228809 37.0 34.0 40.0 27.0 41.0 32 35.23386906258811 37.0 34.0 40.0 27.0 41.0 33 35.150568116869756 37.0 34.0 40.0 27.0 41.0 34 35.14027723798419 37.0 34.0 40.0 27.0 41.0 35 34.94981062771008 37.0 34.0 40.0 26.0 41.0 36 34.74896016704389 37.0 33.0 40.0 25.0 41.0 37 34.64623274883214 37.0 33.0 40.0 25.0 41.0 38 34.589120809614165 37.0 33.0 40.0 25.0 41.0 39 34.45125321018419 37.0 33.0 40.0 24.0 41.0 40 34.32964038316454 37.0 33.0 40.0 24.0 41.0 41 34.34473834617407 37.0 33.0 40.0 24.0 41.0 42 34.317006927139296 36.0 33.0 40.0 24.0 41.0 43 34.153927284088915 36.0 33.0 40.0 23.0 41.0 44 34.170834381167936 36.0 33.0 40.0 24.0 41.0 45 33.97477576339514 36.0 33.0 40.0 23.0 41.0 46 33.71166487582207 35.0 32.0 39.0 23.0 41.0 47 33.64347561022077 35.0 32.0 39.0 23.0 41.0 48 33.60051972596268 35.0 32.0 39.0 23.0 41.0 49 33.31495698162669 35.0 32.0 39.0 22.0 40.0 50 33.17192565327725 35.0 32.0 39.0 21.0 40.0 51 31.418358062229945 34.0 29.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 14.0 11 17.0 12 15.0 13 29.0 14 42.0 15 81.0 16 120.0 17 262.0 18 549.0 19 987.0 20 1720.0 21 2736.0 22 3912.0 23 5025.0 24 6063.0 25 7146.0 26 8519.0 27 10511.0 28 12737.0 29 15552.0 30 19536.0 31 24997.0 32 32223.0 33 43696.0 34 68867.0 35 71901.0 36 65775.0 37 83678.0 38 100755.0 39 68643.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.63024774620303 33.349946274662216 19.71026420673205 27.309541772402703 2 24.670522698002635 32.175761871013464 20.07071930987708 23.08299612110682 3 20.890087865694277 31.208858203211324 21.433437735762787 26.467616195331612 4 21.610236010455484 32.83037272429376 19.22406895132713 26.335322313923626 5 18.093322054822707 35.46832491255344 17.945329705920457 28.493023326703398 6 20.823788512684512 36.9214238357605 20.958825815596352 21.295961835958636 7 81.3682052688934 7.803205230790335 5.952462601830471 4.876126898485784 8 82.78061010645999 5.991022915190173 5.091485486538183 6.136881491811649 9 75.67575806070582 11.267232116321072 8.194295207395045 4.862714615578062 10 40.7878192085229 31.76882101460872 12.610441767068274 14.83291800980011 11 34.484351066505106 28.268824824916365 21.307849995808663 15.938974112769866 12 32.41626848951784 24.495248546367634 27.408152534235615 15.680330429878907 13 26.790425458951557 33.19037059052148 21.750607744069256 18.26859620645771 14 17.56003139693499 36.172469765208845 28.404624189357047 17.86287464849912 15 16.831043338439144 27.178924426358186 34.678219519444 21.31181271575867 16 18.304413098313557 26.910526355897975 32.464583190446795 22.32047735534167 17 18.47983966225433 25.824283852678263 26.886597623892154 28.80927886117525 18 25.192077608346096 24.66930339955648 26.52461839768943 23.61400059440799 19 25.649466937960568 28.407672435472442 23.970340565297242 21.972520061269744 20 27.21596061666019 27.562546199980186 23.708343811679356 21.51314937168027 21 23.842923877673883 30.09502907264733 24.22380222979203 21.838244819886757 22 22.449570578328494 29.357048688111075 23.619335025109926 24.5740457084505 23 22.49422738391898 30.14181965051858 21.677297424994094 25.686655540568342 24 19.743490089389816 28.809583685786787 27.241413471723707 24.205512753099686 25 20.41959107778362 27.64301989742652 25.4479778697332 26.489411155056658 26 22.60609801635384 31.1513987639362 22.1766001386952 24.06590308101476 27 19.750653467760987 29.801482971735137 24.36280225265388 26.085061307849994 28 22.900406178794878 29.396523475305397 27.4127249034087 20.290345442491027 29 19.80475983630918 31.284759531484575 26.551290551199102 22.359190081007142 30 24.69094594697576 28.48204964068799 24.608033652637115 22.21897075969914 31 26.377997759539106 31.920471258849442 19.543372731914374 22.15815824969708 32 24.44053252859636 30.236162867789947 21.922833649588867 23.400470954024826 33 24.011187063243487 28.678813927436504 22.543761383294086 24.766237626025926 34 22.0644246816488 28.34045860862806 23.949764904018352 25.64535180570479 35 21.16351554224488 31.28445470687303 24.716856038956585 22.835173711925503 36 23.101438010104935 31.518864833146626 24.547373554940826 20.83232360180761 37 20.529937587160788 34.43786531324539 20.113851992409867 24.918345107183953 38 20.752611965890125 32.032341891284304 22.19046965852023 25.024576484305346 39 22.80057611851581 26.276338751590806 23.086958841056827 27.83612628883656 40 25.57524214505079 26.116763067450066 21.15315150545255 27.154843282046592 41 19.475854080458458 24.511861487696518 26.011598576469062 30.000685855375963 42 26.240064622817645 26.770916683813052 21.677297424994094 25.31172126837521 43 21.343057238441432 28.09690374400829 24.209475473049693 26.35056354450058 44 22.710957682723304 26.420825617460352 23.341639803997776 27.526576895818565 45 23.32959923184198 28.088825891802504 22.978898516266202 25.602676360089315 46 19.76665675986679 28.049960753831265 27.451894865991477 24.731487620310464 47 20.376305982945063 27.943424552098335 24.049290139685876 27.630979325270722 48 21.465596732280165 24.505460170854196 29.27169779688012 24.75724529998552 49 24.4303209041098 23.747818598873675 27.346120725787397 24.47573977122913 50 20.763890476517073 27.11658779329843 24.640192649154493 27.479329081030002 51 20.777455171730566 25.289011834815543 27.810216196855738 26.123316796598157 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3976.0 1 3115.0 2 2254.0 3 1555.5 4 857.0 5 746.5 6 636.0 7 736.0 8 836.0 9 932.5 10 1029.0 11 1068.0 12 1107.0 13 1217.5 14 1328.0 15 1392.5 16 1457.0 17 1462.0 18 1467.0 19 1537.0 20 1607.0 21 1469.5 22 1332.0 23 1724.5 24 2117.0 25 2785.0 26 3439.0 27 3425.0 28 4126.5 29 4828.0 30 5924.0 31 7020.0 32 8055.5 33 9091.0 34 11046.0 35 13001.0 36 14699.0 37 16397.0 38 18444.0 39 20491.0 40 23155.5 41 25820.0 42 32019.0 43 38218.0 44 48668.0 45 59118.0 46 61552.0 47 63986.0 48 64346.5 49 64707.0 50 60996.5 51 57286.0 52 51451.5 53 45617.0 54 43390.5 55 41164.0 56 37146.5 57 33129.0 58 32217.0 59 31305.0 60 29387.5 61 27470.0 62 25519.5 63 23569.0 64 19084.5 65 14600.0 66 12381.0 67 10162.0 68 8707.5 69 7253.0 70 5911.0 71 4569.0 72 4047.5 73 3526.0 74 3208.5 75 2355.0 76 1819.0 77 1394.0 78 969.0 79 803.5 80 638.0 81 497.5 82 357.0 83 244.5 84 132.0 85 83.5 86 35.0 87 25.5 88 16.0 89 18.5 90 21.0 91 14.5 92 8.0 93 7.5 94 7.0 95 9.5 96 12.0 97 6.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 656115.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.41963493046138 #Duplication Level Percentage of deduplicated Percentage of total 1 79.57106771529486 23.409517632109967 2 9.309979764617191 5.477924117700412 3 3.2303537546484136 2.8510748447400465 4 1.5312408146082401 1.801941830255869 5 0.8517425415589421 1.2528977313703704 6 0.5342484543013342 0.9430436692625119 7 0.3307652942836892 0.6811695943844932 8 0.25193959741014055 0.5929576784266999 9 0.21155772576398474 0.5601555952825586 >10 2.664381961361584 19.42834684156487 >50 1.0964103133778678 23.33972215537396 >100 0.40795448058509287 15.693561622562994 >500 0.005223488867926925 1.0855470295798693 >1k 0.003134093320756155 2.8821396573853972 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT 4411 0.6722906807495637 No Hit AATCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT 3547 0.5406064485646571 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3458 0.5270417533511655 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCC 3187 0.4857380184876127 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGT 2825 0.4305647637990291 No Hit AAACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT 1327 0.20225112975621654 No Hit AAAAACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTT 943 0.14372480434070245 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 935 0.14250550589454594 No Hit AATGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC 933 0.1422006812830068 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 792 0.12071054616949771 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9210275637654984 0.0 2 0.0 0.0 0.0 1.1702216836987418 0.0 3 0.0 0.0 0.0 1.5244278823072175 0.0 4 0.0 0.0 0.0 3.456863507159568 0.0 5 0.0 0.0 0.0 3.870967741935484 0.0 6 0.0 0.0 0.0 5.108555664784375 0.0 7 0.0 0.0 0.0 6.077135867949978 0.0 8 0.0 0.0 0.0 6.692119521730184 0.0 9 0.0 0.0 0.0 8.010028729719638 0.0 10 0.0 0.0 0.0 9.3529335558553 0.0 11 0.0 0.0 0.0 11.278053390030712 0.0 12 0.0 0.0 0.0 12.079437293767098 0.0 13 0.0 0.0 0.0 12.61150865320866 0.0 14 0.0 0.0 0.0 13.06691662284813 0.0 15 0.0 0.0 0.0 13.352842108471839 0.0 16 0.0 0.0 0.0 13.903507769217287 0.0 17 0.0 0.0 0.0 14.490142734124353 0.0 18 0.0 0.0 0.0 15.378401652149394 0.0 19 0.0 0.0 0.0 15.68368350060584 0.0 20 0.0 0.0 0.0 16.064866677335527 0.0 21 0.0 0.0 0.0 16.438429238776738 0.0 22 0.0 0.0 0.0 16.80863872949102 0.0 23 0.0 0.0 0.0 17.20597761063228 0.0 24 0.0 0.0 0.0 17.474070856480953 0.0 25 1.5241230576956783E-4 0.0 0.0 17.71503471190264 0.0 26 1.5241230576956783E-4 0.0 0.0 17.93740426602044 0.0 27 1.5241230576956783E-4 0.0 0.0 18.185074262895988 0.0 28 1.5241230576956783E-4 0.0 0.0 18.40973000160033 0.0 29 1.5241230576956783E-4 0.0 0.0 18.643835303262385 0.0 30 1.5241230576956783E-4 0.0 0.0 19.03081014761132 0.0 31 1.5241230576956783E-4 0.0 0.0 19.26613474771953 0.0 32 1.5241230576956783E-4 0.0 0.0 19.50694619083545 0.0 33 1.5241230576956783E-4 0.0 0.0 19.79149996570723 0.0 34 1.5241230576956783E-4 0.0 0.0 20.0876370758175 0.0 35 1.5241230576956783E-4 0.0 0.0 20.404959496429743 0.0 36 1.5241230576956783E-4 0.0 0.0 20.63479725353025 0.0 37 1.5241230576956783E-4 0.0 0.0 20.88536308421542 0.0 38 1.5241230576956783E-4 0.0 0.0 21.144616416329455 0.0 39 1.5241230576956783E-4 0.0 0.0 21.462091249247464 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATGCGG 75 0.0 45.000004 2 TACGAGA 35 1.2108649E-7 45.000004 19 ATCCCAT 35 1.2108649E-7 45.000004 17 CGTACAG 70 0.0 45.000004 1 ACGTCCT 35 1.2108649E-7 45.000004 10 CACGTGC 35 1.2108649E-7 45.000004 17 CAATACG 35 1.2108649E-7 45.000004 1 TCAACGG 75 0.0 45.000004 2 TGATCGG 25 3.888969E-5 45.0 2 TCTGCGC 25 3.888969E-5 45.0 12 CTTCGTT 20 7.031071E-4 45.0 21 AACCGTA 20 7.031071E-4 45.0 32 AACGTAG 20 7.031071E-4 45.0 30 AGACTCG 25 3.888969E-5 45.0 14 TCGCAAT 20 7.031071E-4 45.0 11 CGAGTTT 20 7.031071E-4 45.0 7 TACCAAC 20 7.031071E-4 45.0 17 CCGATAG 20 7.031071E-4 45.0 1 ACGCAAC 25 3.888969E-5 45.0 45 ACCGCAA 25 3.888969E-5 45.0 31 >>END_MODULE