SRR3548745_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548745_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	398317
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCC	4634	1.1633949843968496	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	4492	1.127744987032941	Illumina Single End Adapter 1 (95% over 21bp)
AATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGT	4384	1.1006309045308134	No Hit
AATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT	3891	0.9768601390349897	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3122	0.783797829367062	No Hit
AAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT	1273	0.31959469467785706	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTT	867	0.21766582897541406	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTT	820	0.20586618196059922	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	696	0.17473519834704518	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT	687	0.1724756914718679	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	666	0.16720350876312084	No Hit
AACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	666	0.16720350876312084	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	585	0.14686794688652505	No Hit
ATACTGGGAACAATAACTCAAAAATAATAACTCACCAAACAAAAACTAAAC	568	0.14259998945563457	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	565	0.14184682049724215	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTAT	491	0.12326865285689538	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	470	0.11799647014814833	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT	441	0.11071583688368812	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCATG	35	1.209246E-7	45.000004	13
CTCACCG	55	1.8189894E-12	45.000004	1
CCTACCG	30	2.1619162E-6	45.000004	1
CGCGACA	30	2.1619162E-6	45.000004	22
TCTAGCG	30	2.1619162E-6	45.000004	1
CGTTCAC	60	0.0	45.000004	21
CGTTAGG	35	1.209246E-7	45.000004	2
TAGCACG	35	1.209246E-7	45.000004	1
CCCAATC	30	2.1619162E-6	45.000004	34
TGACCGG	35	1.209246E-7	45.000004	2
CGCTCAG	30	2.1619162E-6	45.000004	1
CTTATCT	30	2.1619162E-6	45.000004	19
TATCTAT	30	2.1619162E-6	45.000004	21
TACGATG	35	1.209246E-7	45.000004	1
CGAGGTG	35	1.209246E-7	45.000004	14
CGCTAAG	30	2.1619162E-6	45.000004	1
TGCGAAG	35	1.209246E-7	45.000004	1
GATATCG	35	1.209246E-7	45.000004	9
CAAGCGT	60	0.0	45.000004	17
CCGACGG	30	2.1619162E-6	45.000004	2