SRR3548739_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548739_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	407550
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3566	0.8749846644583485	No Hit
AATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCT	2857	0.7010182799656484	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC	2747	0.6740277266593055	No Hit
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT	2414	0.5923199607410135	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGT	2333	0.5724450987608882	No Hit
AAACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCT	1052	0.25812783707520554	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	849	0.208317997791682	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTT	712	0.17470249049196418	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	650	0.1594896331738437	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	650	0.1594896331738437	No Hit
AATGACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTT	572	0.14035087719298245	No Hit
AATGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	504	0.12366580787633419	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCT	487	0.11949454054717212	No Hit
AACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG	477	0.11704085388295914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTAGTA	35	1.2093551E-7	45.000004	13
TGGGTAT	35	1.2093551E-7	45.000004	6
GCGATAG	35	1.2093551E-7	45.000004	1
TAATATG	20	7.027924E-4	45.0	1
AGCCGAA	20	7.027924E-4	45.0	12
TCGCACG	25	3.8863607E-5	45.0	1
ACGCCGT	25	3.8863607E-5	45.0	20
GTACAAT	25	3.8863607E-5	45.0	41
CCTAGTC	25	3.8863607E-5	45.0	31
CCGATAG	20	7.027924E-4	45.0	1
CGTGCCG	20	7.027924E-4	45.0	1
TCATTAC	20	7.027924E-4	45.0	43
CCCTAGT	20	7.027924E-4	45.0	42
TAGACCG	25	3.8863607E-5	45.0	1
CGGCCAG	25	3.8863607E-5	45.0	1
GACGTTA	25	3.8863607E-5	45.0	41
TAGAATG	25	3.8863607E-5	45.0	1
CACATGT	20	7.027924E-4	45.0	23
TAGCGTA	45	3.8380676E-10	45.0	33
TAGAAGG	80	0.0	45.0	2