SRR3548738_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548738_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	965004
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCC	7122	0.7380280288993621	No Hit
AATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCT	6426	0.6659039755275626	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGT	5913	0.6127435741199	No Hit
CTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGCT	4753	0.4925368185002342	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3408	0.353159157889501	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1728	0.17906661526791598	No Hit
ATGATCATGCACATCAATATTTGGAAAATAATCAATTGACACAAATTTTAT	1630	0.16891121694832353	No Hit
AAACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCT	1512	0.1566832883594265	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTT	1341	0.1389631545568723	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1231	0.12756423807569708	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	1192	0.12352280405055316	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCT	1159	0.1201031291062006	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTT	1023	0.10600992327492943	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCCG	35	1.2116652E-7	45.000004	1
TACGGGT	70	0.0	45.000004	4
TAAGGTT	35	1.2116652E-7	45.000004	21
GAACCGT	35	1.2116652E-7	45.000004	10
TCATACG	35	1.2116652E-7	45.000004	1
CACGTCA	35	1.2116652E-7	45.000004	31
TCGCCGA	20	7.0327247E-4	45.0	42
AACGTCG	20	7.0327247E-4	45.0	1
AAACTCG	45	3.8380676E-10	45.0	1
ATCTCCG	25	3.890339E-5	45.0	18
GTATTCG	20	7.0327247E-4	45.0	22
CGTATAT	20	7.0327247E-4	45.0	30
CGTTGTA	20	7.0327247E-4	45.0	15
CCAATCG	40	6.8139343E-9	45.0	1
CGCGCGA	20	7.0327247E-4	45.0	14
ATTGTCG	20	7.0327247E-4	45.0	18
ATTCGTT	20	7.0327247E-4	45.0	27
ATTAACG	40	6.8139343E-9	45.0	1
TAACGTT	20	7.0327247E-4	45.0	10
CGATTGT	20	7.0327247E-4	45.0	16