##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548738_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 965004 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.623749746115042 31.0 31.0 34.0 30.0 34.0 2 31.80285470319294 31.0 31.0 34.0 30.0 34.0 3 31.97591512574041 33.0 31.0 34.0 30.0 34.0 4 35.77321130275108 37.0 35.0 37.0 35.0 37.0 5 35.39892788009169 37.0 35.0 37.0 33.0 37.0 6 35.41610293843342 37.0 35.0 37.0 33.0 37.0 7 35.39810508557478 37.0 35.0 37.0 33.0 37.0 8 35.696618874118656 37.0 35.0 37.0 35.0 37.0 9 36.54427339161288 39.0 37.0 39.0 33.0 39.0 10 36.27859262759532 38.0 35.0 39.0 32.0 39.0 11 36.53926304968684 39.0 35.0 39.0 32.0 39.0 12 36.18257333648358 37.0 35.0 39.0 32.0 39.0 13 35.97613585021409 38.0 35.0 39.0 31.0 39.0 14 37.03941019933596 39.0 35.0 40.0 32.0 41.0 15 37.057165566153095 39.0 35.0 40.0 32.0 41.0 16 37.09702343202723 39.0 35.0 40.0 32.0 41.0 17 37.022388508234165 38.0 35.0 40.0 32.0 41.0 18 36.89287194664478 38.0 35.0 40.0 32.0 41.0 19 36.92560652598331 39.0 35.0 40.0 32.0 41.0 20 36.93433602347762 39.0 35.0 40.0 32.0 41.0 21 36.95779188480048 39.0 35.0 40.0 32.0 41.0 22 36.94973181458315 39.0 35.0 40.0 32.0 41.0 23 36.87950930773344 39.0 35.0 40.0 32.0 41.0 24 36.55454485162756 38.0 35.0 40.0 31.0 41.0 25 36.64549576996572 38.0 35.0 40.0 31.0 41.0 26 36.562502331596555 38.0 35.0 40.0 31.0 41.0 27 36.48641145528931 38.0 35.0 40.0 31.0 41.0 28 36.40243149251195 38.0 35.0 40.0 31.0 41.0 29 36.22448507985459 38.0 35.0 40.0 30.0 41.0 30 36.19834736436326 38.0 35.0 40.0 30.0 41.0 31 36.01622273068298 38.0 35.0 40.0 30.0 41.0 32 35.98729228065376 38.0 35.0 40.0 30.0 41.0 33 35.97315037036116 38.0 35.0 40.0 30.0 41.0 34 35.741205217802204 38.0 34.0 40.0 29.0 41.0 35 35.78983092298063 38.0 34.0 40.0 30.0 41.0 36 35.586797567678474 38.0 34.0 40.0 29.0 41.0 37 35.555575935436536 38.0 34.0 40.0 29.0 41.0 38 35.44901782790538 38.0 34.0 40.0 29.0 41.0 39 35.3499083941621 38.0 34.0 40.0 28.0 41.0 40 35.195720432246915 37.0 34.0 40.0 27.0 41.0 41 35.15076932323596 37.0 34.0 40.0 27.0 41.0 42 35.13904191070711 37.0 34.0 40.0 27.0 41.0 43 35.044794632975616 37.0 34.0 40.0 27.0 41.0 44 34.898174515338795 37.0 34.0 40.0 27.0 41.0 45 34.64369577742683 36.0 33.0 40.0 26.0 41.0 46 34.53711487206271 36.0 33.0 40.0 26.0 41.0 47 34.41760034155299 36.0 33.0 40.0 25.0 41.0 48 34.371807785252706 36.0 33.0 40.0 25.0 41.0 49 34.228059158304006 36.0 33.0 39.0 24.0 41.0 50 33.97842703242681 35.0 33.0 39.0 24.0 41.0 51 32.08146598356069 35.0 30.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 7.0 10 12.0 11 13.0 12 12.0 13 20.0 14 31.0 15 91.0 16 174.0 17 307.0 18 611.0 19 1123.0 20 1935.0 21 2930.0 22 4017.0 23 5334.0 24 6308.0 25 7535.0 26 9012.0 27 10907.0 28 13935.0 29 17810.0 30 23050.0 31 30090.0 32 39888.0 33 57056.0 34 97236.0 35 104165.0 36 95587.0 37 131543.0 38 172900.0 39 131359.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.14758488047718 34.116542522103536 19.362924920518466 26.37294767690082 2 23.225810462961814 33.16887805646401 19.400748597933273 24.2045628826409 3 21.291517962619842 30.0509635193222 21.645298879590136 27.012219638467823 4 21.203124546634005 31.619765306672303 18.871113487612487 28.305996659081206 5 17.825418340234858 36.640262631035725 17.19941057239141 28.334908456338002 6 20.677530870338362 36.71829339567505 20.624474095444164 21.97970163854243 7 81.72163016940863 7.94742819718882 5.845260745033181 4.485680888369375 8 83.77892734123382 5.058735507832092 4.595006860075192 6.567330290858899 9 77.59957471678874 9.715711022959491 8.027220612557047 4.657493647694724 10 43.107075203833354 29.632312404922672 11.836634874052336 15.42397751719164 11 34.834052501336785 25.266838272172965 21.281466190813717 18.617643035676537 12 32.868879299982176 23.036277569833906 27.116260657986913 16.978582472197008 13 25.419065620453384 31.14940456205363 22.69317018375053 20.73835963374245 14 19.082304322054625 32.50059067112675 29.504333660793115 18.912771346025508 15 17.849666944385724 27.13346265922214 32.920070797634 22.09679959875814 16 20.21939805430858 24.513991651848073 33.05302361440989 22.213586679433455 17 19.031630956970126 24.58621933173334 28.03086826583102 28.35128144546551 18 24.080625572536487 25.134507214477868 27.236881919660437 23.547985293325212 19 23.58549809119962 29.921119497950265 24.94549245391729 21.54788995693282 20 29.109620271004054 26.6844489763773 22.865811955183606 21.340118797435036 21 22.649336168554743 29.64609473121355 23.686844821368616 24.017724278863092 22 22.81969815669158 26.080513655901942 24.826529216459207 26.27325897094727 23 23.900729945160847 28.830035937674868 21.293486866375684 25.9757472507886 24 20.88043158370328 28.869621265818584 27.419160956845772 22.830786193632356 25 20.486443579508478 25.726318232877794 26.367559098200626 27.4196790894131 26 23.142183866595374 29.189205433345357 24.272749128501022 23.395861571558253 27 20.926338129168375 26.71512242436301 26.39439836518812 25.964141081280488 28 20.134838819320954 28.61957048882699 29.288894139298904 21.95669655255315 29 22.72892133089604 27.27460197056178 28.175738131655415 21.820738566886767 30 23.224877824340627 25.173159904000396 27.974702695532866 23.627259576126107 31 28.811175912224197 26.51719578364442 21.18105209926591 23.49057620486547 32 28.59335298092029 24.76321341673195 24.910155812825646 21.733277789522116 33 25.71740635271978 24.388603570555148 24.971813588337458 24.922176488387613 34 21.08219240542008 27.538020567790394 26.39211858189189 24.987668444897636 35 23.595031730438425 25.232848775756374 29.2000862172592 21.972033276546004 36 25.489013517042412 26.35450215750401 26.987556528263095 21.168927797190477 37 24.656478107862764 27.381130026404037 23.707051991494335 24.255339874238864 38 24.599379898943425 28.108173644876082 22.34156542356301 24.95088103261748 39 24.62290311750003 25.60103377809833 24.13596213072692 25.640100973674723 40 26.049011195808514 24.4689141184907 22.48954408479136 26.992530600909426 41 20.765820659810736 24.585079440085224 27.569730280910754 27.07936961919329 42 26.41211849899068 24.293785310734464 23.160940265532577 26.13315592474228 43 23.47710475811499 24.18591011021716 25.470567997645606 26.866417134022242 44 21.918561995597948 24.829534385349696 26.20248206225052 27.04942155680184 45 26.21895867789149 26.012741916095685 24.05948576378958 23.708813642223244 46 22.115555997695346 25.25678650036684 29.316458791880656 23.31119871005716 47 23.282805045367688 26.066109570530276 25.424765078693973 25.226320305408063 48 24.558343799611194 22.423430369200542 29.573659798301357 23.44456603288691 49 23.903631487537876 22.50384454364956 28.71988095386133 24.872643014951233 50 21.16934230324434 25.211087207928674 26.108803694077952 27.510766794749035 51 21.76685277988485 24.72083017272467 28.21584159236646 25.29647545502402 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4008.0 1 3249.0 2 2490.0 3 1788.5 4 1087.0 5 1005.0 6 923.0 7 1014.0 8 1105.0 9 1215.5 10 1326.0 11 1401.0 12 1476.0 13 1651.5 14 1827.0 15 2055.0 16 2283.0 17 2163.0 18 2043.0 19 1852.0 20 1661.0 21 1724.0 22 1787.0 23 3123.5 24 4460.0 25 4005.5 26 3992.5 27 4434.0 28 6364.0 29 8294.0 30 8282.0 31 8270.0 32 11159.5 33 14049.0 34 14456.5 35 14864.0 36 16987.5 37 19111.0 38 22801.5 39 26492.0 40 30777.0 41 35062.0 42 45933.0 43 56804.0 44 71291.5 45 85779.0 46 86968.0 47 88157.0 48 87620.5 49 87084.0 50 85343.5 51 83603.0 52 76883.5 53 70164.0 54 64803.0 55 59442.0 56 57277.0 57 55112.0 58 51546.5 59 47981.0 60 46163.5 61 44346.0 62 40864.5 63 37383.0 64 31913.0 65 26443.0 66 22918.0 67 19393.0 68 16563.0 69 13733.0 70 12060.5 71 10388.0 72 8865.5 73 7343.0 74 5782.5 75 3428.5 76 2635.0 77 2223.5 78 1812.0 79 1492.5 80 1173.0 81 968.0 82 763.0 83 508.0 84 253.0 85 205.0 86 157.0 87 124.0 88 91.0 89 77.5 90 64.0 91 55.5 92 47.0 93 33.0 94 19.0 95 12.0 96 5.0 97 4.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 965004.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.750068627495917 #Duplication Level Percentage of deduplicated Percentage of total 1 77.94715740878732 18.51250337776926 2 9.595811153626693 4.558023468702495 3 3.5641215980902237 2.5394439765414973 4 1.7355554040630445 1.6487823981327487 5 0.9951844884969792 1.1817849949411339 6 0.6234142219271731 0.8883678332476398 7 0.4144869808050145 0.6890865967525873 8 0.3097509525037828 0.5885285103517657 9 0.2194536023628351 0.469083430500168 >10 2.6042319773927693 15.245698516418974 >50 1.1138820592043621 19.177508417405914 >100 0.8644346239851284 29.398215036850463 >500 0.00690511931291166 1.1631491307634452 >1k 0.004315699570569787 1.9451076008545911 >5k 0.001294709871170936 1.9947167107673076 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCC 7122 0.7380280288993621 No Hit AATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCT 6426 0.6659039755275626 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGT 5913 0.6127435741199 No Hit CTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGCT 4753 0.4925368185002342 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3408 0.353159157889501 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 1728 0.17906661526791598 No Hit ATGATCATGCACATCAATATTTGGAAAATAATCAATTGACACAAATTTTAT 1630 0.16891121694832353 No Hit AAACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCT 1512 0.1566832883594265 No Hit AATGACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTT 1341 0.1389631545568723 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1231 0.12756423807569708 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 1192 0.12352280405055316 No Hit AATGATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCT 1159 0.1201031291062006 No Hit AAAAACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTT 1023 0.10600992327492943 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.0725302693045831E-4 0.0 0.0 0.6700490360661717 0.0 2 2.0725302693045831E-4 0.0 0.0 0.8544006035208144 0.0 3 2.0725302693045831E-4 0.0 0.0 1.2031038213313106 0.0 4 3.1087954039568747E-4 0.0 0.0 3.0511790624702075 0.0 5 3.1087954039568747E-4 0.0 0.0 3.28983092298063 0.0 6 3.1087954039568747E-4 0.0 0.0 4.394593183033439 0.0 7 3.1087954039568747E-4 0.0 0.0 5.320703333872191 0.0 8 3.1087954039568747E-4 0.0 0.0 5.920597220322403 0.0 9 3.1087954039568747E-4 0.0 0.0 7.379140397345504 0.0 10 3.1087954039568747E-4 0.0 0.0 8.626596366439932 0.0 11 3.1087954039568747E-4 0.0 0.0 10.588971651930976 0.0 12 3.1087954039568747E-4 0.0 0.0 11.219124480313035 0.0 13 3.1087954039568747E-4 0.0 0.0 11.518397851200616 0.0 14 3.1087954039568747E-4 0.0 0.0 11.855805779043402 0.0 15 3.1087954039568747E-4 0.0 0.0 12.08305872307265 0.0 16 3.1087954039568747E-4 0.0 0.0 12.49227982474684 0.0 17 3.1087954039568747E-4 0.0 0.0 13.008236235290216 0.0 18 3.1087954039568747E-4 0.0 0.0 13.727818744792767 0.0 19 3.1087954039568747E-4 0.0 0.0 13.988957558725145 0.0 20 3.1087954039568747E-4 0.0 0.0 14.277142892671948 0.0 21 3.1087954039568747E-4 0.0 0.0 14.588436939121497 0.0 22 3.1087954039568747E-4 0.0 0.0 14.89527504549204 0.0 23 3.1087954039568747E-4 0.0 0.0 15.230817696092451 0.0 24 3.1087954039568747E-4 0.0 0.0 15.466153508171987 0.0 25 3.1087954039568747E-4 0.0 0.0 15.654546509651773 0.0 26 3.1087954039568747E-4 0.0 0.0 15.842006872510373 0.0 27 3.1087954039568747E-4 0.0 0.0 16.043560441200245 0.0 28 3.1087954039568747E-4 0.0 0.0 16.248533684834467 0.0 29 3.1087954039568747E-4 0.0 0.0 16.45350692846869 0.0 30 3.1087954039568747E-4 0.0 0.0 16.80801323103324 0.0 31 3.1087954039568747E-4 0.0 0.0 17.033297271306648 0.0 32 3.1087954039568747E-4 0.0 0.0 17.259928456255103 0.0 33 4.1450605386091663E-4 0.0 0.0 17.49049744871524 0.0 34 4.1450605386091663E-4 0.0 0.0 17.695159812809067 0.0 35 4.1450605386091663E-4 0.0 0.0 17.9427235534775 0.0 36 4.1450605386091663E-4 0.0 0.0 18.165831436968137 0.0 37 4.1450605386091663E-4 0.0 0.0 18.37235907830434 0.0 38 4.1450605386091663E-4 0.0 0.0 18.63671031415414 0.0 39 4.1450605386091663E-4 0.0 0.0 18.869248210370113 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCCCG 35 1.2116652E-7 45.000004 1 TACGGGT 70 0.0 45.000004 4 TAAGGTT 35 1.2116652E-7 45.000004 21 GAACCGT 35 1.2116652E-7 45.000004 10 TCATACG 35 1.2116652E-7 45.000004 1 CACGTCA 35 1.2116652E-7 45.000004 31 TCGCCGA 20 7.0327247E-4 45.0 42 AACGTCG 20 7.0327247E-4 45.0 1 AAACTCG 45 3.8380676E-10 45.0 1 ATCTCCG 25 3.890339E-5 45.0 18 GTATTCG 20 7.0327247E-4 45.0 22 CGTATAT 20 7.0327247E-4 45.0 30 CGTTGTA 20 7.0327247E-4 45.0 15 CCAATCG 40 6.8139343E-9 45.0 1 CGCGCGA 20 7.0327247E-4 45.0 14 ATTGTCG 20 7.0327247E-4 45.0 18 ATTCGTT 20 7.0327247E-4 45.0 27 ATTAACG 40 6.8139343E-9 45.0 1 TAACGTT 20 7.0327247E-4 45.0 10 CGATTGT 20 7.0327247E-4 45.0 16 >>END_MODULE