SRR3548730_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548730_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1009623
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	5922	0.5865555756950862	No Hit
AATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	5263	0.5212836870792366	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGT	5065	0.5016724064328962	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	4374	0.4332310179146077	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2742	0.27158652289022733	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1646	0.16303115123169737	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1467	0.14530176115243018	No Hit
AAACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	1353	0.13401041774999184	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTT	1069	0.1058811061158472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATA	20	7.032879E-4	45.0	41
TCGTTAC	20	7.032879E-4	45.0	38
CGTATAC	20	7.032879E-4	45.0	23
CGCATAT	25	3.8904676E-5	45.0	43
CGCATAA	20	7.032879E-4	45.0	42
ATTCGAT	25	3.8904676E-5	45.0	33
TACGCTA	20	7.032879E-4	45.0	43
CTAGTCA	20	7.032879E-4	45.0	40
TGCGAAT	20	7.032879E-4	45.0	44
TACTCGA	20	7.032879E-4	45.0	16
TTACGTA	20	7.032879E-4	45.0	26
ATGCGAA	20	7.032879E-4	45.0	17
CAATGCG	35	1.211738E-7	45.0	1
CGGTATG	35	1.211738E-7	45.0	1
ATACGGA	20	7.032879E-4	45.0	28
GTGCGTT	20	7.032879E-4	45.0	23
ATCATAC	25	3.8904676E-5	45.0	42
CGATAGA	20	7.032879E-4	45.0	44
ATCGCAC	20	7.032879E-4	45.0	32
GTTGCGA	25	3.8904676E-5	45.0	16