SRR3548729_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548729_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1033617
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	5324	0.5150844074739482	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGT	4830	0.46729107590142194	No Hit
AATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	4810	0.4653561232061779	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	4180	0.4044051133059924	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2736	0.2647015287093769	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1612	0.15595718723666502	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1532	0.14821737645568908	No Hit
AAACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	1185	0.11464594719320599	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGT	25	3.8905313E-5	45.000004	10
GTCGATC	20	7.032955E-4	45.000004	17
TCCGCAA	20	7.032955E-4	45.000004	31
ACGTTAC	25	3.8905313E-5	45.000004	22
ATTAACG	25	3.8905313E-5	45.000004	17
CGGATTA	25	3.8905313E-5	45.000004	16
GCGATAC	20	7.032955E-4	45.000004	41
ATTGGAC	20	7.032955E-4	45.000004	12
CGCAATA	20	7.032955E-4	45.000004	31
CGATACG	20	7.032955E-4	45.000004	42
TCGTTTA	70	0.0	45.0	38
TAAGACG	35	1.2117744E-7	45.0	1
GCGTAAG	55	1.8189894E-12	45.0	1
AGGCGAT	30	2.1652886E-6	44.999996	44
TACGAAT	210	0.0	43.92857	11
CGAATAT	210	0.0	43.92857	13
ACTACGG	175	0.0	43.714287	2
GCGATGA	110	0.0	42.954544	9
CGGGTCA	150	0.0	42.0	6
TAGTAGG	125	0.0	41.4	2