SRR3548724_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548724_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	498130
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3655	0.7337442033204183	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	3511	0.70483608696525	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC	1787	0.3587416939353181	No Hit
AATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	1731	0.34749964868608596	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	1635	0.3282275711159737	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGT	1476	0.29630819264047537	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	1272	0.25535502780398694	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	849	0.17043743601067995	No Hit
GCCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTC	828	0.16622166904221788	No Hit
AACCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTC	703	0.1411278180394676	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	703	0.1411278180394676	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	687	0.1379158051111156	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	616	0.12366249774155341	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	582	0.11683697026880534	No Hit
CCTAAAGGGATATAAGCACTCTCCAAGCAGTTGGGGTGTGAATCATACCTG	534	0.10720093148374923	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	20	7.029432E-4	45.000004	1
CGTGGGA	30	2.1630149E-6	45.000004	4
CCTTATT	20	7.029432E-4	45.000004	18
GGTACGC	30	2.1630149E-6	45.000004	38
CTCGTTA	20	7.029432E-4	45.000004	11
TAAAGCG	30	2.1630149E-6	45.000004	1
ACGTTAG	20	7.029432E-4	45.000004	31
TTAGCCG	20	7.029432E-4	45.000004	15
AACCCGC	20	7.029432E-4	45.000004	43
ACCGCAA	20	7.029432E-4	45.000004	40
AGCTTCA	20	7.029432E-4	45.000004	12
TTCACGA	20	7.029432E-4	45.000004	21
TTGTCAC	20	7.029432E-4	45.000004	34
TGAACGA	20	7.029432E-4	45.000004	28
TGTATCC	20	7.029432E-4	45.000004	33
TTCGTAC	30	2.1630149E-6	45.000004	11
GATCAAT	20	7.029432E-4	45.000004	39
CGACATA	20	7.029432E-4	45.000004	14
CTAAGGT	20	7.029432E-4	45.000004	33
TATGCTA	20	7.029432E-4	45.000004	36