SRR3548723_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548723_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	509485
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3884	0.76233843979705	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	3472	0.6814724672954062	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC	1631	0.32012718725772105	No Hit
AATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	1612	0.3163979312442957	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	1610	0.3160053779797246	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGT	1423	0.279301647742328	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	1182	0.23199897936151212	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	959	0.18822929036183597	No Hit
GCCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTC	780	0.15309577318272374	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	672	0.13189789689588505	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	660	0.12954257730845856	No Hit
AACCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTC	627	0.12306544844303562	No Hit
CCTAAAGGGATATAAGCACTCTCCAAGCAGTTGGGGTGTGAATCATACCTG	596	0.11698087284218377	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	581	0.11403672335790062	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	575	0.11285906356418736	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTATC	25	3.8877366E-5	45.000004	33
CAGGTAC	25	3.8877366E-5	45.000004	23
GTGCAAC	25	3.8877366E-5	45.000004	17
ATGGGCC	50	2.1827873E-11	45.000004	5
GGTACGA	25	3.8877366E-5	45.000004	8
ACCGGAT	25	3.8877366E-5	45.000004	38
GATAACG	25	3.8877366E-5	45.000004	1
CTCAACT	25	3.8877366E-5	45.000004	29
GGTAACA	25	3.8877366E-5	45.000004	8
CAAGTAT	25	3.8877366E-5	45.000004	18
CATGACG	25	3.8877366E-5	45.000004	1
TATGGAT	25	3.8877366E-5	45.000004	27
TAGAACG	25	3.8877366E-5	45.000004	31
CCGGATG	25	3.8877366E-5	45.000004	39
ATAGCGC	25	3.8877366E-5	45.000004	10
ACTTCGT	25	3.8877366E-5	45.000004	10
ATGTACG	25	3.8877366E-5	45.000004	40
CGTTAGG	50	2.1827873E-11	45.000004	2
GTAGCTA	25	3.8877366E-5	45.000004	13
TACGATG	25	3.8877366E-5	45.000004	1