SRR3548722_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548722_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	395201
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCC	10394	2.6300540737498133	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCT	8967	2.268971991467633	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGT	8323	2.1060169382162495	No Hit
CTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGCT	4642	1.174592169554227	TruSeq Adapter, Index 19 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3121	0.7897247223564718	No Hit
AATGACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTT	2100	0.5313751736458157	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCT	1837	0.4648267590416016	No Hit
AACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTG	1478	0.37398690792786454	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCT	1332	0.33704368156963166	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTAT	1038	0.26265115725921745	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTT	899	0.22747918147980392	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	755	0.19104202671551943	No Hit
AATGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTC	728	0.1842100601972161	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	593	0.1500502276056994	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCT	479	0.12120414675064083	No Hit
CCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	444	0.1123478938565439	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATTT	25	3.8861457E-5	45.0	26
CTTCGAC	20	7.027663E-4	45.0	34
TTCTAGT	40	6.7957444E-9	45.0	13
AAGTAGA	20	7.027663E-4	45.0	20
TTAGGCA	20	7.027663E-4	45.0	27
AGACTAC	20	7.027663E-4	45.0	28
CGGCGAA	20	7.027663E-4	45.0	33
TCGTTGA	55	1.8189894E-12	45.0	24
CCCCTAG	20	7.027663E-4	45.0	1
TACCCCC	20	7.027663E-4	45.0	33
ACCGGCC	20	7.027663E-4	45.0	26
ACACGAC	70	0.0	45.0	26
TCCGCTT	25	3.8861457E-5	45.0	28
TACCAGT	25	3.8861457E-5	45.0	42
CGAAAAC	20	7.027663E-4	45.0	20
GCGAAAA	20	7.027663E-4	45.0	19
GCAACGC	20	7.027663E-4	45.0	18
CGCATTG	20	7.027663E-4	45.0	40
CAGTTGA	25	3.8861457E-5	45.0	16
GGCGTGA	20	7.027663E-4	45.0	8