SRR3548719_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548719_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	526854
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2484	0.4714778667334783	No Hit
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	2343	0.44471523420150555	TruSeq Adapter, Index 15 (95% over 23bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC	1572	0.2983748818458245	No Hit
AATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCT	1567	0.2974258523234141	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGT	1170	0.22207290824402967	No Hit
AAACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCT	884	0.16778841956215573	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	773	0.14671996416464522	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTT	639	0.12128597296404697	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	604	0.1146427663071743	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	564	0.10705053012789122	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	537	0.10192577070687514	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCA	20	7.0298027E-4	45.000004	9
GATCGTG	40	6.8030204E-9	45.000004	29
TTATGGG	160	0.0	45.000004	3
GAATCGA	20	7.0298027E-4	45.000004	25
GTGATCG	20	7.0298027E-4	45.000004	8
CGTCTAA	20	7.0298027E-4	45.000004	12
TCGATAC	20	7.0298027E-4	45.000004	11
ATCGTGA	40	6.8030204E-9	45.000004	30
ATCGTAG	20	7.0298027E-4	45.000004	1
TAACCTA	20	7.0298027E-4	45.000004	33
TCGTGAG	40	6.8030204E-9	45.000004	31
GTTAAGT	20	7.0298027E-4	45.000004	29
CCATCCC	20	7.0298027E-4	45.000004	33
TGATTCG	20	7.0298027E-4	45.000004	17
TACGAGT	20	7.0298027E-4	45.000004	43
ACGTGAC	20	7.0298027E-4	45.000004	12
TATTAGG	40	6.8030204E-9	45.000004	2
TTGCGCA	20	7.0298027E-4	45.000004	29
AATTACG	20	7.0298027E-4	45.000004	1
CAATGTG	20	7.0298027E-4	45.000004	22