SRR3548714_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548714_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	452519
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT	4497	0.993770427319074	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT	4257	0.9407339802306643	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCC	3504	0.7743321274907794	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3409	0.7533385338516173	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGT	3222	0.7120143021618982	No Hit
AAACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT	1113	0.2459565233724993	No Hit
AACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTG	1063	0.23490726356241395	No Hit
AATGACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTT	969	0.21413465511945354	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCT	885	0.1955718986385102	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	835	0.1845226388284249	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTT	769	0.16993761587911227	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	755	0.16684382313228838	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	747	0.16507594156267472	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	714	0.1577834300880184	No Hit
AATGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTC	580	0.12817141379698974	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTAT	550	0.12154185791093855	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	478	0.10563092378441567	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAAG	30	2.1625729E-6	45.000004	1
CATGACG	30	2.1625729E-6	45.000004	1
CGTTCGA	35	1.2097371E-7	45.000004	14
CCAGACG	30	2.1625729E-6	45.000004	1
GTTCGAA	35	1.2097371E-7	45.000004	15
CGTCGCC	35	1.2097371E-7	45.000004	27
CGCACCG	30	2.1625729E-6	45.000004	1
CCGGGTG	20	7.028749E-4	45.0	5
CGAACCG	20	7.028749E-4	45.0	1
CGACATG	20	7.028749E-4	45.0	1
TACGGGT	40	6.7993824E-9	45.0	4
CGCTGCC	20	7.028749E-4	45.0	25
CGTTCAT	50	2.1827873E-11	45.0	17
AATATGG	25	3.8870443E-5	45.0	2
CTGCGCG	25	3.8870443E-5	45.0	1
CTAACCG	20	7.028749E-4	45.0	1
AACGCGC	20	7.028749E-4	45.0	16
CGTACAT	45	3.8380676E-10	45.0	35
ACGTCAC	20	7.028749E-4	45.0	25
GGCGCAG	20	7.028749E-4	45.0	9