SRR3548713_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548713_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	460818
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT	4722	1.024699556006927	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT	4614	1.0012629714985093	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCC	3741	0.8118172467221333	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3529	0.7658120993537578	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGT	3364	0.7300062063547865	No Hit
AAACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT	1211	0.26279355407123856	No Hit
AACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTG	1093	0.23718691544167111	No Hit
AATGACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTT	981	0.21288230928479357	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCT	910	0.19747492502463013	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTT	829	0.17989748664331687	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	806	0.17490636216467237	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	788	0.1710002647466028	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	773	0.1677451835648781	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	753	0.16340507532257856	No Hit
AATGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTC	555	0.12043800372381287	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTAT	554	0.1202209983116979	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	470	0.10199254369403973	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	30	2.1626602E-6	45.000004	2
GACCGAT	35	1.2098099E-7	45.000004	9
CGAATCA	30	2.1626602E-6	45.000004	9
AACGTAA	20	7.028884E-4	45.0	20
AAGTAAG	20	7.028884E-4	45.0	1
CAGCGCG	20	7.028884E-4	45.0	1
CCTTACG	20	7.028884E-4	45.0	1
CACGGTA	25	3.887156E-5	45.0	4
TAGACGG	40	6.7993824E-9	45.0	2
CTATACG	20	7.028884E-4	45.0	1
GAGTACG	25	3.887156E-5	45.0	1
CGCATAG	25	3.887156E-5	45.0	1
GAATCGG	20	7.028884E-4	45.0	2
GGATCGA	40	6.7993824E-9	45.0	8
ATTAACG	25	3.887156E-5	45.0	1
TTCGTCG	20	7.028884E-4	45.0	14
CGATTAG	25	3.887156E-5	45.0	1
TTTCCCG	20	7.028884E-4	45.0	15
TCTAGCG	25	3.887156E-5	45.0	1
TAGCACG	20	7.028884E-4	45.0	1