##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548713_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 460818 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.082357894005877 31.0 31.0 33.0 28.0 34.0 2 31.370408707993178 31.0 31.0 34.0 30.0 34.0 3 31.553832532583364 31.0 31.0 34.0 30.0 34.0 4 35.49035627948561 37.0 35.0 37.0 33.0 37.0 5 34.77862192883091 35.0 35.0 37.0 32.0 37.0 6 34.852909391560225 35.0 35.0 37.0 32.0 37.0 7 34.92057167905767 35.0 35.0 37.0 32.0 37.0 8 35.27052111679665 37.0 35.0 37.0 33.0 37.0 9 36.749799269993794 39.0 37.0 39.0 32.0 39.0 10 36.05302961255854 37.0 35.0 39.0 31.0 39.0 11 36.32320786080405 38.0 35.0 39.0 32.0 39.0 12 36.19029204588362 37.0 35.0 39.0 32.0 39.0 13 35.995668571974186 37.0 35.0 39.0 31.0 39.0 14 36.98847701261669 39.0 36.0 40.0 32.0 41.0 15 37.00702229513604 38.0 36.0 40.0 32.0 41.0 16 36.85123844988694 38.0 35.0 40.0 32.0 41.0 17 36.80265961833088 38.0 35.0 40.0 32.0 41.0 18 36.67042737045862 38.0 35.0 40.0 31.0 41.0 19 36.736529389042964 38.0 35.0 40.0 31.0 41.0 20 36.64114032003958 38.0 35.0 40.0 31.0 41.0 21 36.78052289624103 38.0 35.0 40.0 31.0 41.0 22 36.77421888901909 39.0 35.0 40.0 31.0 41.0 23 36.667055106354354 38.0 35.0 40.0 31.0 41.0 24 36.22697681080166 38.0 35.0 40.0 30.0 41.0 25 36.364551731920194 38.0 35.0 40.0 30.0 41.0 26 36.25425222105039 38.0 35.0 40.0 30.0 41.0 27 36.14452777452269 38.0 35.0 40.0 30.0 41.0 28 35.98281317136049 38.0 35.0 40.0 29.0 41.0 29 35.558589291216926 38.0 34.0 40.0 27.0 41.0 30 35.6658594065336 38.0 34.0 40.0 28.0 41.0 31 35.493196880330196 38.0 34.0 40.0 27.0 41.0 32 35.5058070648282 38.0 34.0 40.0 27.0 41.0 33 35.41979045957406 38.0 34.0 40.0 27.0 41.0 34 35.23983872157772 38.0 34.0 40.0 26.0 41.0 35 35.26230095178574 38.0 34.0 40.0 27.0 41.0 36 35.20109240524459 38.0 34.0 40.0 26.0 41.0 37 35.169704742436274 38.0 34.0 40.0 26.0 41.0 38 35.19077813800676 38.0 34.0 40.0 27.0 41.0 39 35.163517918136876 38.0 34.0 40.0 26.0 41.0 40 34.950540126470756 38.0 33.0 40.0 26.0 41.0 41 35.0043813392706 38.0 34.0 40.0 26.0 41.0 42 35.00298816452482 38.0 34.0 40.0 26.0 41.0 43 35.06996037481175 38.0 34.0 40.0 26.0 41.0 44 34.98488557304619 38.0 34.0 40.0 26.0 41.0 45 34.80222777756077 37.0 33.0 40.0 25.0 41.0 46 34.75759193434284 37.0 33.0 40.0 26.0 41.0 47 34.654798640678095 37.0 33.0 40.0 25.0 41.0 48 34.68722358935632 37.0 33.0 40.0 26.0 41.0 49 34.57308091263796 37.0 33.0 40.0 25.0 41.0 50 34.51477372845679 37.0 33.0 40.0 25.0 41.0 51 33.23520131592082 36.0 31.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 5.0 11 6.0 12 10.0 13 13.0 14 22.0 15 48.0 16 94.0 17 160.0 18 339.0 19 623.0 20 1182.0 21 1780.0 22 2379.0 23 2989.0 24 3389.0 25 3811.0 26 4514.0 27 5306.0 28 6715.0 29 8598.0 30 11593.0 31 15349.0 32 20403.0 33 28224.0 34 41678.0 35 49307.0 36 55496.0 37 71161.0 38 79464.0 39 46155.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.31286972297089 35.49492424341063 20.303460368301586 25.888745665316893 2 21.685567838061882 34.92029391213017 19.066312513834095 24.327825735973853 3 18.855600258670453 31.662174654635887 23.723465663233643 25.75875942346002 4 21.568601920931908 32.47355789053379 18.87296069163965 27.084879496894654 5 16.072939859120087 37.330139013667 18.935241244916647 27.661679882296262 6 19.588210529970617 36.456041213667866 22.33419701487355 21.621551241487964 7 76.25049368731256 9.382011987378966 8.195643399346379 6.171850925962094 8 77.97850778398413 6.088737853122057 6.400574630331281 9.53217973256253 9 72.42881137455568 9.63807837367464 11.910776054754805 6.022334197014874 10 30.358623144061212 37.50569639206802 14.854237464682368 17.2814429991884 11 22.157771614824075 28.103502901362358 31.131379416602652 18.607346067210916 12 25.48424757713457 22.582885217157315 34.09306928114787 17.839797924560237 13 23.79486044381947 29.924612319831255 26.823170969883993 19.457356266465286 14 15.567534254304302 33.00326810150645 32.247221245697865 19.18197639849138 15 13.899630656788581 30.353198008758337 33.154303868338474 22.592867466114605 16 14.486630296559596 29.26296281829269 32.47898302583667 23.77142385931105 17 13.688050379976477 27.813366665364637 30.342998754388933 28.155584200269956 18 17.967397106883844 27.455307735374916 29.288569456922254 25.288725700818976 19 19.306537505045377 33.576379394902105 27.94313590180939 19.173947198243123 20 19.943882400427064 31.652409411090716 26.080578449626536 22.323129738855688 21 17.288170166963965 31.75331692772418 27.70963807837368 23.248874826938184 22 15.927546233003051 30.24664835140988 26.811669683041895 27.01413573254517 23 17.413382289754306 30.92609229674188 23.60498070821886 28.05554470528495 24 14.656979545069854 33.53319531789123 27.806422492176956 24.003402644861964 25 16.72439010628925 31.32060813596691 25.79977344634975 26.155228311394087 26 19.23557673528378 32.83074879887504 23.687225759410442 24.246448706430737 27 16.471144790351072 30.107330876832066 25.855326831851187 27.56619750096567 28 18.737983325304132 31.497901557664846 27.08791757266426 22.676197544366754 29 17.880594942037856 32.95682894331385 25.252702802407896 23.909873312240407 30 21.484186815619182 29.52293530200643 24.7355789053379 24.257298977036488 31 20.856390158370548 34.195712841078254 19.412870156981715 25.53502684356948 32 21.887165865916696 28.968920484876893 21.92991593210335 27.213997717103066 33 19.837115737666497 29.91701713040723 22.65493101397949 27.59093611794678 34 16.044078139308795 33.03039377802082 23.06008011839815 27.865447964272228 35 17.665976589456143 29.035758151808306 27.126110525196502 26.172154733539056 36 20.729876003107517 29.536823648381787 26.36290249078812 23.370397857722573 37 18.473236722523858 30.05980669157889 23.963473649032807 27.503482936864444 38 18.630782651719333 28.21026956412293 25.98618109535652 27.172766688801218 39 17.44463106909886 26.304094024104963 26.508730127729386 29.742544779066787 40 19.902000355888877 28.072037116605685 25.484898593370918 26.541063934134517 41 17.021904526298886 25.907191125346667 31.201689170127906 25.869215178226547 42 22.510405409510913 27.409302588006547 26.223585016210304 23.85670698627224 43 18.57739932033905 26.780420903697337 28.534909660646935 26.107270115316677 44 20.81494212465659 24.686101671375685 26.600523417054024 27.89843278691371 45 21.94402128389082 27.236349274550907 26.85246670051951 23.967162741038763 46 18.597146812841512 25.670438220729224 30.864028748876997 24.868386217552267 47 18.57653129869059 27.921435360597897 25.626820132894114 27.8752132078174 48 19.27528872570082 23.9662947193903 32.770855305131306 23.98756124977757 49 20.799100729572196 22.446822823761224 30.51139495419016 26.24268149247642 50 18.815237252017063 22.859133106779684 28.02255988264347 30.30306975855978 51 18.206754076446664 23.135163990989934 32.229643807316556 26.428438125246846 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4073.0 1 3213.5 2 2354.0 3 1632.5 4 911.0 5 1104.5 6 1298.0 7 1268.0 8 1238.0 9 1264.5 10 1291.0 11 1330.5 12 1370.0 13 1412.0 14 1454.0 15 1442.0 16 1430.0 17 1414.5 18 1399.0 19 1442.5 20 1486.0 21 1472.5 22 1459.0 23 1718.0 24 1977.0 25 2346.0 26 2989.0 27 3263.0 28 4346.0 29 5429.0 30 6000.5 31 6572.0 32 7556.0 33 8540.0 34 9725.0 35 10910.0 36 12446.0 37 13982.0 38 14860.5 39 15739.0 40 17677.0 41 19615.0 42 23337.5 43 27060.0 44 36897.5 45 46735.0 46 49850.5 47 52966.0 48 55237.5 49 57509.0 50 53188.0 51 48867.0 52 42395.5 53 35924.0 54 30258.5 55 24593.0 56 21031.0 57 17469.0 58 15026.0 59 12583.0 60 10724.0 61 8865.0 62 7576.0 63 6287.0 64 5171.0 65 4055.0 66 3266.5 67 2478.0 68 2052.0 69 1626.0 70 1736.5 71 1847.0 72 1613.5 73 1380.0 74 1120.0 75 650.0 76 440.0 77 378.5 78 317.0 79 241.0 80 165.0 81 129.0 82 93.0 83 83.0 84 73.0 85 71.0 86 69.0 87 45.0 88 21.0 89 16.5 90 12.0 91 12.0 92 12.0 93 8.0 94 4.0 95 3.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 460818.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.070864761986954 #Duplication Level Percentage of deduplicated Percentage of total 1 79.13464559996835 32.50128327424066 2 8.913531388259733 7.321728843978825 3 3.176217511344964 3.913499995893114 4 1.681721242298152 2.7627898283915235 5 1.0881114384933916 2.2344838868166588 6 0.7913286127124772 1.950033026100294 7 0.5892062973300023 1.6939448508186117 8 0.4686368083736501 1.53978551833627 9 0.37210311403169444 1.3754337006518937 >10 3.5306865011821036 29.574651702936954 >50 0.1960548012986029 5.068931087536848 >100 0.049278639245324087 3.7037668804219903 >500 0.004768900572128137 1.5122789853723726 >1k 0.0037091448894329953 4.84738841850399 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT 4722 1.024699556006927 No Hit AATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT 4614 1.0012629714985093 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCC 3741 0.8118172467221333 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3529 0.7658120993537578 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGT 3364 0.7300062063547865 No Hit AAACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT 1211 0.26279355407123856 No Hit AACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTG 1093 0.23718691544167111 No Hit AATGACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTT 981 0.21288230928479357 No Hit AATGATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCT 910 0.19747492502463013 No Hit AAAAACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTT 829 0.17989748664331687 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 806 0.17490636216467237 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 788 0.1710002647466028 No Hit CCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC 773 0.1677451835648781 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 753 0.16340507532257856 No Hit AATGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTC 555 0.12043800372381287 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTAT 554 0.1202209983116979 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 470 0.10199254369403973 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1700541211497814E-4 0.0 0.0 1.2701326771089672 0.0 2 2.1700541211497814E-4 0.0 0.0 1.7462425512892292 0.0 3 2.1700541211497814E-4 0.0 0.0 2.4693045844563364 0.0 4 2.1700541211497814E-4 0.0 0.0 5.660586175019205 0.0 5 2.1700541211497814E-4 0.0 0.0 6.291203902625331 0.0 6 2.1700541211497814E-4 0.0 0.0 8.614463844728288 0.0 7 2.1700541211497814E-4 0.0 0.0 10.493730713643998 0.0 8 2.1700541211497814E-4 0.0 0.0 12.087852471040629 0.0 9 2.1700541211497814E-4 0.0 0.0 14.59274594308382 0.0 10 2.1700541211497814E-4 0.0 0.0 17.181403504203395 0.0 11 2.1700541211497814E-4 0.0 0.0 20.272211588957028 0.0 12 2.1700541211497814E-4 0.0 0.0 21.60744588970049 0.0 13 2.1700541211497814E-4 0.0 0.0 22.324865782152607 0.0 14 2.1700541211497814E-4 0.0 0.0 22.990421381109243 0.0 15 2.1700541211497814E-4 0.0 0.0 23.43398044347226 0.0 16 2.1700541211497814E-4 0.0 0.0 24.232777365467495 0.0 17 2.1700541211497814E-4 0.0 0.0 25.210386747045472 0.0 18 2.1700541211497814E-4 0.0 0.0 26.76566453567352 0.0 19 2.1700541211497814E-4 0.0 0.0 27.325538498930165 0.0 20 2.1700541211497814E-4 0.0 0.0 27.94747601005169 0.0 21 2.1700541211497814E-4 0.0 0.0 28.563771380458228 0.0 22 2.1700541211497814E-4 0.0 0.0 29.19026600523417 0.0 23 2.1700541211497814E-4 0.0 0.0 29.892712524250356 0.0 24 2.1700541211497814E-4 0.0 0.0 30.33583757578914 0.0 25 2.1700541211497814E-4 0.0 0.0 30.704963781796717 0.0 26 2.1700541211497814E-4 0.0 0.0 31.05325746824126 0.0 27 2.1700541211497814E-4 0.0 0.0 31.469473848677787 0.0 28 2.1700541211497814E-4 0.0 0.0 31.872235893563186 0.0 29 2.1700541211497814E-4 0.0 0.0 32.27998906292723 0.0 30 2.1700541211497814E-4 0.0 0.0 32.94424262941118 0.0 31 2.1700541211497814E-4 0.0 0.0 33.33268231709699 0.0 32 2.1700541211497814E-4 0.0 0.0 33.71265879371032 0.0 33 2.1700541211497814E-4 0.0 0.0 34.110646719529186 0.0 34 2.1700541211497814E-4 0.0 0.0 34.48693410413656 0.0 35 2.1700541211497814E-4 0.0 0.0 34.94047541545686 0.0 36 2.1700541211497814E-4 0.0 0.0 35.304610496985795 0.0 37 2.1700541211497814E-4 0.0 0.0 35.66961360016319 0.0 38 2.1700541211497814E-4 0.0 0.0 36.02289841108637 0.0 39 2.1700541211497814E-4 0.0 0.0 36.36793701634919 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGG 30 2.1626602E-6 45.000004 2 GACCGAT 35 1.2098099E-7 45.000004 9 CGAATCA 30 2.1626602E-6 45.000004 9 AACGTAA 20 7.028884E-4 45.0 20 AAGTAAG 20 7.028884E-4 45.0 1 CAGCGCG 20 7.028884E-4 45.0 1 CCTTACG 20 7.028884E-4 45.0 1 CACGGTA 25 3.887156E-5 45.0 4 TAGACGG 40 6.7993824E-9 45.0 2 CTATACG 20 7.028884E-4 45.0 1 GAGTACG 25 3.887156E-5 45.0 1 CGCATAG 25 3.887156E-5 45.0 1 GAATCGG 20 7.028884E-4 45.0 2 GGATCGA 40 6.7993824E-9 45.0 8 ATTAACG 25 3.887156E-5 45.0 1 TTCGTCG 20 7.028884E-4 45.0 14 CGATTAG 25 3.887156E-5 45.0 1 TTTCCCG 20 7.028884E-4 45.0 15 TCTAGCG 25 3.887156E-5 45.0 1 TAGCACG 20 7.028884E-4 45.0 1 >>END_MODULE