SRR3548711_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548711_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	701710
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCC	9499	1.353693121089909	No Hit
AATCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCT	9168	1.3065226375568255	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGT	7825	1.1151330321642843	No Hit
CTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGCT	4774	0.6803380313804848	TruSeq Adapter, Index 16 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2939	0.4188339912499466	No Hit
AATGACTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTT	2047	0.29171595103390285	No Hit
AACTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTG	1864	0.26563680152769664	No Hit
AATGATCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCT	1729	0.24639808467885596	No Hit
AAACTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCT	1379	0.19651992988556524	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCATCTTCCCTCGTAT	1215	0.17314845163956621	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATCTTCCCTC	1043	0.14863690128400622	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTT	881	0.1255504410653974	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	837	0.11928004446281226	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	808	0.11514728306565389	No Hit
CCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGC	806	0.11486226503826366	TruSeq Adapter, Index 13 (95% over 21bp)
AATGATACCTGTCTCTTATACACATCTGACGCCTCTTCCCTCGTATGCCGT	787	0.11215459377805646	No Hit
AATGCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTC	775	0.11044448561371507	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	35	1.2110286E-7	45.000004	1
GGATCGA	30	2.1642882E-6	45.000004	8
GTATACG	30	2.1642882E-6	45.000004	1
AGTAACG	30	2.1642882E-6	45.000004	1
TAATACG	20	7.031407E-4	45.0	1
AGTTTCG	20	7.031407E-4	45.0	1
TACCACG	20	7.031407E-4	45.0	1
TATGCGT	25	3.889248E-5	45.0	18
CCCAACG	25	3.889248E-5	45.0	1
TGTTCGA	20	7.031407E-4	45.0	33
ACTACCG	45	3.8380676E-10	45.0	1
TATTACG	25	3.889248E-5	45.0	1
TCGAATA	25	3.889248E-5	45.0	45
GTAACGA	20	7.031407E-4	45.0	9
ATAACGG	140	0.0	41.785717	2
CGATAGG	70	0.0	41.785717	2
TAGGGCG	125	0.0	41.4	5
CGTGCGA	55	6.002665E-11	40.909092	45
TTACGCG	45	1.9264917E-8	40.0	1
TTTGCGC	130	0.0	39.807693	13