##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548703_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 592463 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.125916723913562 31.0 31.0 33.0 30.0 34.0 2 31.411345518623104 31.0 31.0 34.0 30.0 34.0 3 31.530016220422205 31.0 31.0 34.0 30.0 34.0 4 35.411905891169575 37.0 35.0 37.0 33.0 37.0 5 34.67092290995387 35.0 35.0 37.0 32.0 37.0 6 34.82214923126001 35.0 35.0 37.0 32.0 37.0 7 34.63642286522534 35.0 35.0 37.0 31.0 37.0 8 35.09104534797954 36.0 35.0 37.0 32.0 37.0 9 36.686979608853214 38.0 35.0 39.0 32.0 39.0 10 36.09138460967183 37.0 35.0 39.0 32.0 39.0 11 36.27782494434251 37.0 35.0 39.0 32.0 39.0 12 35.974447349454735 37.0 35.0 39.0 31.0 39.0 13 35.96587803795342 37.0 35.0 39.0 31.0 39.0 14 36.91711887493396 39.0 36.0 40.0 31.0 41.0 15 37.0010093457313 38.0 36.0 40.0 32.0 41.0 16 36.65752629278115 38.0 35.0 40.0 31.0 41.0 17 36.66147928225054 38.0 35.0 40.0 31.0 41.0 18 36.37365371339645 38.0 35.0 40.0 30.0 41.0 19 36.40621777224907 38.0 35.0 40.0 30.0 41.0 20 36.544754693542046 38.0 35.0 40.0 30.0 41.0 21 36.82607521482354 39.0 35.0 40.0 31.0 41.0 22 36.74231302207902 39.0 35.0 40.0 31.0 41.0 23 36.68232952943897 38.0 35.0 40.0 31.0 41.0 24 36.222906746919215 38.0 35.0 40.0 30.0 41.0 25 36.44672156742278 38.0 35.0 40.0 30.0 41.0 26 36.29704302209589 38.0 35.0 40.0 30.0 41.0 27 36.24036437718473 38.0 35.0 40.0 30.0 41.0 28 36.20836744235505 38.0 35.0 40.0 30.0 41.0 29 35.92049630103483 38.0 34.0 40.0 29.0 41.0 30 36.0018279622525 38.0 35.0 40.0 30.0 41.0 31 35.76617273990106 38.0 34.0 40.0 29.0 41.0 32 35.88382565662328 38.0 35.0 40.0 29.0 41.0 33 35.58350310483524 38.0 34.0 40.0 28.0 41.0 34 35.78104624255017 38.0 35.0 40.0 29.0 41.0 35 35.690925846846135 38.0 34.0 40.0 29.0 41.0 36 35.45717622872652 38.0 34.0 40.0 28.0 41.0 37 35.53690779002233 38.0 34.0 40.0 28.0 41.0 38 35.20230799222905 38.0 34.0 40.0 27.0 41.0 39 35.26478109181502 38.0 34.0 40.0 27.0 41.0 40 34.82775126885561 37.0 33.0 40.0 25.0 41.0 41 35.00500790766681 37.0 33.0 40.0 26.0 41.0 42 35.21385301698165 38.0 34.0 40.0 27.0 41.0 43 35.12272665128455 38.0 34.0 40.0 27.0 41.0 44 35.128841801091376 37.0 34.0 40.0 27.0 41.0 45 34.92656925411376 37.0 33.0 40.0 26.0 41.0 46 34.82021830899145 37.0 33.0 40.0 26.0 41.0 47 34.735932876820996 37.0 33.0 40.0 26.0 41.0 48 34.88229813507341 37.0 33.0 40.0 26.0 41.0 49 34.75519146343316 37.0 33.0 40.0 26.0 41.0 50 34.62730162052314 37.0 33.0 40.0 26.0 41.0 51 33.21745324180582 35.0 31.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 5.0 11 12.0 12 5.0 13 19.0 14 28.0 15 52.0 16 71.0 17 189.0 18 386.0 19 727.0 20 1231.0 21 1894.0 22 2663.0 23 3278.0 24 3775.0 25 4414.0 26 5170.0 27 6442.0 28 8444.0 29 11273.0 30 15126.0 31 20794.0 32 28009.0 33 37842.0 34 53234.0 35 62158.0 36 73191.0 37 91459.0 38 101786.0 39 58779.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.796829506652735 44.2275720171555 16.778431733289672 22.197166742902088 2 19.73389055519079 42.84183147302026 16.94283018517612 20.481447786612836 3 17.68346715322307 26.349493554871785 33.197516131809074 22.76952316009607 4 29.663793350808405 27.363565319690853 17.94069840648277 25.03194292301798 5 15.730433799241473 40.95394986691152 18.661249732050777 24.65436660179623 6 19.586370794463114 30.170491659394767 30.43970678337719 19.803430762764933 7 67.11541480227457 16.58027589908568 9.694107480129562 6.610201818510185 8 68.84193612090544 4.9981180259357965 7.043984181290646 19.115961671868117 9 70.21332977755573 7.76791124509041 13.198123764690791 8.820635212663069 10 34.38577598938668 30.84935261780061 16.69251919529152 18.072352197521198 11 24.290124446589914 23.833387063833523 28.572248393570572 23.304240096005994 12 23.80975689621124 21.672914595510605 37.59019550587969 16.927133002398463 13 23.989346170140582 29.93739693449211 23.906471796551006 22.166785098816298 14 14.838226184588743 27.835155950666962 36.963658490066045 20.36295937467825 15 13.852173047093236 28.642970109525827 28.673520540523207 28.83133630285773 16 16.091300216216034 27.724262949753825 33.909965685620875 22.274471148409265 17 15.444339984100273 26.141716866707288 29.823296982258807 28.59064616693363 18 17.23786970663147 26.702426987001722 28.040400835157637 28.019302471209173 19 18.70479675524041 29.754094348507838 32.567097017028914 18.97401187922284 20 20.311141792820816 33.126794415853816 25.835031048352384 20.727032742972977 21 17.831155700862332 26.815851791588674 29.429179543701462 25.92381296384753 22 17.07431518930296 31.97870584323409 26.88792380283663 24.059055164626315 23 20.35705183277268 27.144142334626803 22.704540199134797 29.794265633465717 24 14.696951539589815 36.15381888826813 25.93292745707327 23.21630211506879 25 18.250759963069424 24.777243473432094 28.862393094589873 28.109603468908606 26 21.889974563812423 29.85300347869825 23.57801246660129 24.67900949088804 27 17.26453803866233 26.195391104592186 30.714154301618834 25.82591655512665 28 21.368423007006346 24.985188948508178 30.624190877742574 23.022197166742902 29 19.574386923740388 29.284697947382366 30.966659521354078 20.17425560752317 30 25.90760942033511 24.73032071201071 25.39112147087666 23.97094839677752 31 24.87362079994869 33.05505997842903 22.843283040459912 19.228036181162366 32 26.950037386300917 23.169716927470578 22.979831651934383 26.900414034294123 33 25.035318661249732 28.843826534315227 26.36941041043913 19.75144439399591 34 24.678334343241687 24.221765747396883 28.08411664525886 23.01578326410257 35 28.045126868682097 23.930945898731228 28.770741801597737 19.25318543098894 36 23.01797749395321 27.968160036998093 32.18597617066382 16.82788629838488 37 31.83017336103689 24.883241653909188 21.54986893696315 21.736716048090766 38 25.283941782018456 32.61503249991983 24.669726210750714 17.431299507311003 39 28.952694092289306 23.21090093389798 26.963033978493172 20.87337099531954 40 28.135090292558353 28.980206358878107 22.754332338053178 20.130371010510363 41 25.20646858959969 21.325888705286236 32.24623309810064 21.221409607013435 42 30.353119097732684 22.478872098342006 24.303289825693756 22.86471897823155 43 23.054266679944572 22.8461524179569 30.436837405880198 23.66274349621833 44 23.69599451780111 21.131614970048762 26.92674479250181 28.245645719648316 45 28.929063924667027 26.778549884127784 25.08612352163764 19.20626266956755 46 20.90746595146026 21.7225379475174 36.49645631879122 20.873539782231127 47 23.459692841578292 27.537584625537797 23.983607415146597 25.01911511773731 48 22.190752840261755 20.86054319003887 35.011469070642384 21.937234899056985 49 25.79891064927261 20.025891912237554 29.374998945081803 24.800198493408026 50 21.99107792385347 21.07760315834069 26.467475606071606 30.463843311734234 51 19.161027777262042 19.947237211437677 35.27832117786258 25.613413833437697 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3783.0 1 2969.5 2 2156.0 3 1478.5 4 801.0 5 1084.0 6 1367.0 7 1300.0 8 1233.0 9 1185.0 10 1137.0 11 1153.0 12 1169.0 13 1130.5 14 1092.0 15 1088.5 16 1085.0 17 1132.0 18 1179.0 19 1101.0 20 1023.0 21 1294.5 22 1566.0 23 1815.5 24 2065.0 25 2901.5 26 3995.0 27 4252.0 28 4900.5 29 5549.0 30 6512.5 31 7476.0 32 8745.5 33 10015.0 34 11488.0 35 12961.0 36 14034.0 37 15107.0 38 16114.5 39 17122.0 40 19391.5 41 21661.0 42 25034.0 43 28407.0 44 57420.5 45 86434.0 46 84688.5 47 82943.0 48 74693.0 49 66443.0 50 58876.5 51 51310.0 52 44695.0 53 38080.0 54 33259.0 55 28438.0 56 25495.5 57 22553.0 58 19923.0 59 17293.0 60 15618.0 61 13943.0 62 12098.0 63 10253.0 64 9337.0 65 8421.0 66 6888.5 67 5356.0 68 4798.5 69 4241.0 70 3881.0 71 3521.0 72 2963.0 73 2405.0 74 2184.5 75 1611.0 76 1258.0 77 973.0 78 688.0 79 522.5 80 357.0 81 339.0 82 321.0 83 248.0 84 175.0 85 126.5 86 78.0 87 52.0 88 26.0 89 18.0 90 10.0 91 6.5 92 3.0 93 3.0 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 592463.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.11543992848202 #Duplication Level Percentage of deduplicated Percentage of total 1 77.91994552755371 25.024333298207424 2 8.8625791143424 5.692512543161655 3 3.1370239112924594 3.022407089319741 4 1.6267536750717422 2.0897563972081556 5 1.0400906309910245 1.6701484089884606 6 0.7777392052539587 1.4986462035815313 7 0.635954852821245 1.4296778911105126 8 0.4834387895717713 1.2420679524472225 9 0.4134401989000026 1.1950032484613424 >10 4.817459599576584 32.992248137807444 >50 0.21536856526253256 4.345287554790532 >100 0.05753719022944965 3.4379850035561073 >500 0.005806505435999506 1.3211152432304112 >1k 0.004750777174908686 4.336302682739727 >5k 5.278641305454096E-4 1.083609474493621 >10k+ 0.0015835923916362286 9.61889887089613 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCC 20903 3.528152812918275 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGT 18562 3.133022652891404 No Hit AATCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCT 17275 2.9157938976779985 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGCT 6392 1.0788859388687564 Illumina Single End Adapter 1 (95% over 24bp) AATGACTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTT 4569 0.7711873990443285 No Hit AATGATCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCT 3929 0.6631637756281827 No Hit AACTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTG 3600 0.6076328817158202 Illumina Single End Adapter 1 (95% over 22bp) AATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTAT 3335 0.5629043501450723 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3287 0.5548025783888615 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGAGAGGTC 3166 0.5343793620867464 No Hit AATGCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTC 1557 0.2628012213420922 No Hit AATGATACGGCGACCACCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1104 0.18634075039285153 No Hit AATGATACCTGTCTCTTCTACACATCTGACGCTTGAGAGGTCGTATGCCGT 1032 0.17418809275853514 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATG 921 0.15545274557229735 No Hit AAACTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCT 869 0.14667582616973548 Illumina Single End Adapter 1 (95% over 21bp) AATGATACGGCCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGC 807 0.13621103765129638 No Hit AATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTA 793 0.1338480208890682 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 772 0.1303034957457259 No Hit CCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC 683 0.11528146061441812 Illumina Single End Adapter 1 (95% over 23bp) GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 642 0.10836119723932128 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTTGAGCGGTCGTATGCC 596 0.10059699930628578 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.063607347631835E-4 0.0 0.0 1.2993216454023289 0.0 2 5.063607347631835E-4 0.0 0.0 1.649048126212101 0.0 3 5.063607347631835E-4 0.0 0.0 2.7090299309830317 0.0 4 5.063607347631835E-4 0.0 0.0 7.378857413880698 0.0 5 5.063607347631835E-4 0.0 0.0 7.963704062532175 0.0 6 5.063607347631835E-4 0.0 0.0 10.153039092736593 0.0 7 5.063607347631835E-4 0.0 0.0 11.930702845578542 0.0 8 5.063607347631835E-4 0.0 0.0 12.967729630373542 0.0 9 5.063607347631835E-4 0.0 0.0 17.485142532107492 0.0 10 5.063607347631835E-4 0.0 0.0 19.216558671174404 0.0 11 5.063607347631835E-4 0.0 0.0 24.673270735894057 0.0 12 5.063607347631835E-4 0.0 0.0 25.668607153526885 0.0 13 6.751476463509113E-4 0.0 0.0 26.294131447871006 0.0 14 6.751476463509113E-4 0.0 0.0 27.347024202355254 0.0 15 6.751476463509113E-4 0.0 0.0 27.794309518062732 0.0 16 8.439345579386393E-4 0.0 0.0 28.41831473020256 0.0 17 0.001012721469526367 0.0 0.0 29.084179096416147 0.0 18 0.001012721469526367 0.0 0.0 30.84901504397743 0.0 19 0.001012721469526367 0.0 0.0 31.352843975066797 0.0 20 0.001012721469526367 0.0 0.0 31.809750144734778 0.0 21 0.001012721469526367 0.0 0.0 32.310034550680804 0.0 22 0.001012721469526367 0.0 0.0 32.75411291506811 0.0 23 0.001012721469526367 0.0 0.0 33.2123693800288 0.0 24 0.001012721469526367 0.0 0.0 33.51247250883178 0.0 25 0.001012721469526367 0.0 0.0 33.784725797222784 0.0 26 0.0011815083811140949 0.0 0.0 34.05495364267473 0.0 27 0.0011815083811140949 0.0 0.0 34.38240025115493 0.0 28 0.0013502952927018227 0.0 0.0 34.675751903494394 0.0 29 0.0013502952927018227 0.0 0.0 34.98699496846216 0.0 30 0.0013502952927018227 0.0 0.0 35.49774416292663 0.0 31 0.0013502952927018227 0.0 0.0 35.80139181687295 0.0 32 0.0013502952927018227 0.0 0.0 36.0868104843678 0.0 33 0.0013502952927018227 0.0 0.0 36.37054128274677 0.0 34 0.0013502952927018227 0.0 0.0 36.64397607951889 0.0 35 0.0013502952927018227 0.0 0.0 36.938509240239476 0.0 36 0.0013502952927018227 0.0 0.0 37.21160646318842 0.0 37 0.0013502952927018227 0.0 0.0 37.46833135571335 0.0 38 0.0013502952927018227 0.0 0.0 37.73366438072926 0.0 39 0.0015190822042895505 0.0 0.0 38.00524252147392 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACACG 25 3.8885082E-5 45.000004 1 CCTAACG 35 1.210592E-7 45.000004 1 TCGTAGC 25 3.8885082E-5 45.000004 8 CGCACCG 25 3.8885082E-5 45.000004 1 TTCGCGG 35 1.210592E-7 45.000004 2 CGATCGA 25 3.8885082E-5 45.000004 18 CGATCAA 35 1.210592E-7 45.000004 18 CAATACG 35 1.210592E-7 45.000004 1 ACGCATG 20 7.030516E-4 45.0 1 CCGATCA 40 6.8048394E-9 45.0 17 CCTACCG 45 3.8380676E-10 45.0 1 TCTAGCG 45 3.8380676E-10 45.0 1 GCACCGT 20 7.030516E-4 45.0 24 TAGCAAC 20 7.030516E-4 45.0 11 ATTCACG 20 7.030516E-4 45.0 1 CGTAGTG 20 7.030516E-4 45.0 28 CGTAGCA 20 7.030516E-4 45.0 9 TAACACG 20 7.030516E-4 45.0 1 GGTATGC 45 3.8380676E-10 45.0 8 ACTCGCG 20 7.030516E-4 45.0 1 >>END_MODULE