SRR3548700_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548700_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394188
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCC	4076	1.0340243741564938	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGT	3611	0.9160603569870215	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCT	3392	0.8605031101910764	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT	3114	0.7899783859478218	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2723	0.6907871371020934	No Hit
AATGACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTT	889	0.225526905943357	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCT	854	0.2166478938983429	No Hit
AACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	794	0.20142673039260456	No Hit
AAACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCT	772	0.19584563710716715	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	623	0.15804641440125017	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGCCACATCGTAT	605	0.15348006534952865	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	502	0.12735040133134443	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTT	464	0.11771033111104345	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	454	0.11517347052675372	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGCCACATC	435	0.11035343541660324	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	421	0.10680183059859762	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	40	6.7957444E-9	45.000004	1
TGTCATA	20	7.027639E-4	45.000004	30
CTAGACG	20	7.027639E-4	45.000004	1
ACAGTTG	65	0.0	45.000004	1
GGTACGA	20	7.027639E-4	45.000004	9
ATTAGCG	20	7.027639E-4	45.000004	1
CGCATCG	20	7.027639E-4	45.000004	1
CGTTGCA	20	7.027639E-4	45.000004	31
TAAACGG	40	6.7957444E-9	45.000004	2
ATTAACG	20	7.027639E-4	45.000004	1
TACGGCA	20	7.027639E-4	45.000004	15
CGACAAG	20	7.027639E-4	45.000004	1
CGTTATT	20	7.027639E-4	45.000004	31
ACGATTG	20	7.027639E-4	45.000004	1
AGTGCGT	20	7.027639E-4	45.000004	1
TCTACGG	40	6.7957444E-9	45.000004	2
TCGTAGG	20	7.027639E-4	45.000004	2
ATCGGTT	20	7.027639E-4	45.000004	18
GAATTAG	20	7.027639E-4	45.000004	42
CGATCGG	20	7.027639E-4	45.000004	2