SRR3548699_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548699_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401356
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCC	4203	1.0471999920270285	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCT	3753	0.9350800785337706	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGT	3663	0.9126560958351189	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT	3167	0.789075035629217	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2751	0.685426404488783	No Hit
AATGACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTT	877	0.21850925363019363	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCT	835	0.2080447283708229	No Hit
AAACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCT	792	0.19733104774813381	No Hit
AACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	778	0.19384287266167693	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	600	0.14949321799101045	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGCCACATCGTAT	564	0.14052362491154985	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGCCACATC	508	0.1265709245657222	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTT	503	0.12532514774913045	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	494	0.12308274947926529	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	485	0.12084035120940013	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	435	0.1083825830434826	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	413	0.10290116505047887	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACACGA	85	0.0	45.000004	25
ATCATAT	30	2.161958E-6	45.000004	42
TCACGCG	20	7.0277945E-4	45.0	1
CGGGTCA	20	7.0277945E-4	45.0	6
CGACGAT	20	7.0277945E-4	45.0	34
CGACACG	25	3.886254E-5	45.0	1
CGACAAG	20	7.0277945E-4	45.0	1
AACGGTT	20	7.0277945E-4	45.0	4
CTAAACG	20	7.0277945E-4	45.0	1
CGGATAT	25	3.886254E-5	45.0	23
ATTGGGC	35	1.2092823E-7	45.0	4
TACAGCG	20	7.0277945E-4	45.0	1
TATACGG	20	7.0277945E-4	45.0	2
TCGACAG	25	3.886254E-5	45.0	1
TATCGTG	25	3.886254E-5	45.0	37
GCCGTAA	20	7.0277945E-4	45.0	13
GCGTAAG	25	3.886254E-5	45.0	1
GACTACG	20	7.0277945E-4	45.0	1
CCAACGG	95	0.0	42.63158	2
ACGGGAT	200	0.0	41.625	5