##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548698_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 406929 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.14823224690302 31.0 31.0 33.0 28.0 34.0 2 31.426880364879377 31.0 31.0 34.0 30.0 34.0 3 31.538777034814427 31.0 31.0 34.0 30.0 34.0 4 35.44523246069953 37.0 35.0 37.0 33.0 37.0 5 34.755394675729676 35.0 35.0 37.0 32.0 37.0 6 34.88497747764352 35.0 35.0 37.0 32.0 37.0 7 34.79201039984862 35.0 35.0 37.0 32.0 37.0 8 35.23117792047261 37.0 35.0 37.0 33.0 37.0 9 36.715070688006996 39.0 35.0 39.0 32.0 39.0 10 36.15699298894893 37.0 35.0 39.0 32.0 39.0 11 36.40553266048868 38.0 35.0 39.0 32.0 39.0 12 36.11675255388532 37.0 35.0 39.0 32.0 39.0 13 35.911517734051884 37.0 35.0 39.0 31.0 39.0 14 36.89398887766662 39.0 35.0 40.0 31.0 41.0 15 36.95856279596686 38.0 36.0 40.0 32.0 41.0 16 36.73141014771619 38.0 35.0 40.0 31.0 41.0 17 36.69477476414804 38.0 35.0 40.0 31.0 41.0 18 36.53889007664728 38.0 35.0 40.0 31.0 41.0 19 36.540966605968116 38.0 35.0 40.0 30.0 41.0 20 36.62944641448508 38.0 35.0 40.0 31.0 41.0 21 36.86187270998135 39.0 35.0 40.0 31.0 41.0 22 36.836669296118 39.0 35.0 40.0 31.0 41.0 23 36.77907448228069 39.0 35.0 40.0 31.0 41.0 24 36.33770264591612 38.0 35.0 40.0 30.0 41.0 25 36.57971292289318 38.0 35.0 40.0 31.0 41.0 26 36.44934128558053 38.0 35.0 40.0 31.0 41.0 27 36.413448046219365 38.0 35.0 40.0 30.0 41.0 28 36.42106362534987 38.0 35.0 40.0 30.0 41.0 29 35.87153532925891 38.0 34.0 40.0 29.0 41.0 30 36.12181731948325 38.0 35.0 40.0 30.0 41.0 31 35.9169732312025 38.0 35.0 40.0 29.0 41.0 32 35.83228769637947 38.0 34.0 40.0 29.0 41.0 33 35.88773717282376 38.0 35.0 40.0 30.0 41.0 34 35.61961914732054 38.0 34.0 40.0 28.0 41.0 35 35.76216489854495 38.0 35.0 40.0 29.0 41.0 36 35.53761466988099 38.0 34.0 40.0 28.0 41.0 37 35.52209353474439 38.0 34.0 40.0 28.0 41.0 38 35.44831407936028 38.0 34.0 40.0 28.0 41.0 39 35.1911635690747 38.0 34.0 40.0 27.0 41.0 40 35.03898223031536 38.0 34.0 40.0 26.0 41.0 41 35.0723172838505 38.0 34.0 40.0 26.0 41.0 42 35.172845877290634 38.0 34.0 40.0 27.0 41.0 43 35.176652438140316 38.0 34.0 40.0 27.0 41.0 44 35.23562587085216 38.0 34.0 40.0 28.0 41.0 45 35.01532945550698 37.0 34.0 40.0 27.0 41.0 46 34.914980254540716 37.0 34.0 40.0 26.0 41.0 47 34.85895082434528 37.0 33.0 40.0 26.0 41.0 48 34.90667413725736 37.0 34.0 40.0 26.0 41.0 49 34.8331330526947 37.0 34.0 40.0 26.0 41.0 50 34.673301730768756 37.0 34.0 40.0 26.0 41.0 51 33.418303930169635 36.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 0.0 10 4.0 11 10.0 12 7.0 13 11.0 14 25.0 15 29.0 16 58.0 17 123.0 18 265.0 19 466.0 20 896.0 21 1448.0 22 1870.0 23 2348.0 24 2740.0 25 2986.0 26 3500.0 27 4476.0 28 5607.0 29 7446.0 30 9937.0 31 13605.0 32 18471.0 33 25204.0 34 37244.0 35 41248.0 36 46243.0 37 61380.0 38 73569.0 39 45710.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.20447547360842 39.735678705621865 18.376670131644588 24.683175689125132 2 20.741947612482768 38.79767723607804 17.755185794082013 22.70518935735718 3 18.257976207151614 28.154788673208348 28.52487780423612 25.062357315403915 4 25.759776275468205 28.683382113341636 18.437122937908086 27.119718673282073 5 15.908426285666541 39.051038387531975 18.79983977548909 26.240695551312392 6 19.569261468216816 33.01976511873079 26.623809067429455 20.787164345622948 7 72.9289384634666 12.808868377530233 8.315701264839813 5.946491894163356 8 74.6442254054147 4.950249306390058 6.245807008102151 14.159718280093086 9 73.00659328777256 8.400974125707434 11.556315720924289 7.036116865595718 10 33.583008338063884 33.09447102565804 14.90849755116986 18.414023085108212 11 24.855195869549725 24.754195449328996 29.066249886343808 21.324358794777467 12 27.314101477161863 21.512843763899845 34.461785716918676 16.711269042019616 13 24.49886835295592 30.631633528207626 24.466676004905032 20.402822113931425 14 16.049482833614707 29.889489321232944 33.98332387222341 20.07770397292894 15 13.607287757815245 30.777359195338743 29.793649506424952 25.821703540421055 16 16.255169820779546 27.50135773070978 32.75215086661309 23.49132158189758 17 14.838215020310669 27.468428153314218 29.19256184739844 28.50079497897668 18 18.126257897569356 27.098830508516226 28.003410914434706 26.771500679479715 19 19.04804032153029 31.4917344303306 29.504901346426525 19.955323901712585 20 20.95992175539222 31.801125011979973 26.40804661255403 20.830906620073772 21 17.659345979274025 28.876781944761866 29.004568364505843 24.459303711458265 22 17.570632714797913 29.91848700879023 27.13495474640539 25.375925530006466 23 19.6110377977485 29.270708157934184 23.235011513064933 27.883242531252378 24 15.248851765295665 34.78813257349562 27.08752632523118 22.875489335977527 25 17.689818125520667 26.59309117806792 28.429529475657915 27.2875612207535 26 21.14226314664229 31.728876536201646 23.13990892760162 23.988951389554444 27 17.069562503532556 28.45926439255988 27.851541669431278 26.619631434476283 28 18.852428802076037 27.446802759203692 30.425209311698108 23.27555912702216 29 18.133630191016124 33.75183385799488 26.70318409353966 21.411351857449333 30 24.938994271727992 25.524108628286506 26.00134175740731 23.535555342578192 31 23.042594654104278 31.618783620729907 21.639155724954477 23.699466000211338 32 23.837327887665907 29.184943810836778 22.363360684542023 24.614367616955292 33 25.7725549174426 26.014611885611494 25.687036313460087 22.525796883485818 34 17.352658571888462 32.558259548963086 24.494199233772967 25.594882645375485 35 25.124776066586556 25.186211845309625 27.94787297046905 21.741139117634773 36 22.436100646550138 29.872533046305378 26.52084270228959 21.170523604854903 37 24.136643001604703 30.27014540620108 22.024480929105568 23.568730663088648 38 24.561041361023666 27.348014027016998 25.382560594108554 22.70838401785078 39 20.25291881384713 30.17700876565691 26.125442030427916 23.444630390068046 40 27.506272593007626 26.951384639580862 23.058567956572276 22.48377481083924 41 20.07696674358426 24.92252948303021 31.381395771743964 23.619108001641564 42 26.331620503822535 25.793688825323336 23.325444979345292 24.54924569150884 43 21.77972078667286 25.108557021003662 27.624720774385704 25.487001417937773 44 21.737207227796496 23.6306579280415 26.26084648673356 28.371288357428448 45 25.733481762174726 27.072781738337646 25.53762449960558 21.656111999882043 46 19.210968006703872 25.203905349581866 34.01158433043602 21.57354231327824 47 22.71698502687201 27.340150247340446 25.313998265053613 24.628866460733935 48 20.627431320942964 23.27039852160942 33.2070213722787 22.89514878516891 49 23.5033629945273 22.030133020748092 29.653575930936356 24.81292805378825 50 21.08525074398728 22.311017401069964 27.584173160428477 29.019558694514274 51 18.86791061831425 22.600502790413067 33.45694212012415 25.074644471148527 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2512.0 1 1978.5 2 1445.0 3 1014.0 4 583.0 5 778.5 6 974.0 7 925.0 8 876.0 9 834.5 10 793.0 11 771.5 12 750.0 13 798.0 14 846.0 15 837.5 16 829.0 17 816.5 18 804.0 19 818.0 20 832.0 21 954.5 22 1077.0 23 1278.0 24 1479.0 25 1917.5 26 2758.0 27 3160.0 28 3693.5 29 4227.0 30 4877.5 31 5528.0 32 6591.0 33 7654.0 34 8747.5 35 9841.0 36 11213.5 37 12586.0 38 12897.5 39 13209.0 40 14570.5 41 15932.0 42 18542.0 43 21152.0 44 35824.0 45 50496.0 46 50325.5 47 50155.0 48 47648.5 49 45142.0 50 41808.0 51 38474.0 52 34583.5 53 30693.0 54 25835.5 55 20978.0 56 18677.0 57 16376.0 58 14569.0 59 12762.0 60 11222.5 61 9683.0 62 8314.5 63 6946.0 64 5987.0 65 5028.0 66 4231.0 67 3434.0 68 2975.5 69 2517.0 70 2109.5 71 1702.0 72 1469.0 73 1236.0 74 1069.5 75 716.0 76 529.0 77 365.0 78 201.0 79 155.5 80 110.0 81 86.0 82 62.0 83 43.5 84 25.0 85 20.0 86 15.0 87 12.0 88 9.0 89 6.0 90 3.0 91 2.0 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 406929.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.129486996077134 #Duplication Level Percentage of deduplicated Percentage of total 1 78.32934303537459 26.73340294537082 2 8.424720082609026 5.750627490099893 3 2.9664693465013046 3.0373223095703312 4 1.5878676648333898 2.1677243527369017 5 1.042762824105549 1.7794480122651506 6 0.7621869987578931 1.5607830757611942 7 0.6608166267379607 1.5787332728331354 8 0.5412080445388926 1.4776922334609974 9 0.43262721642341323 1.3288810461364737 >10 4.9684197957837535 35.94634825401503 >50 0.21774767261378009 4.620193918986231 >100 0.055702892994222805 3.7108702293786697 >500 0.002893656778920665 0.6737834235511903 >1k 0.005063899363111164 3.497550743138938 >5k 0.0021702425841904987 6.136638692695065 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCC 8938 2.1964519609071855 No Hit AATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCT 8173 2.0084584780145924 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGT 7744 1.9030346817258046 No Hit CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT 3697 0.9085122957567536 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2165 0.532033843741783 No Hit AATGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT 2081 0.5113914220908315 No Hit AATGATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCT 1883 0.4627342853421605 No Hit AACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTG 1644 0.4040016808829059 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTAT 1406 0.34551481953854357 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGCAGAGTC 1290 0.31700861821103926 No Hit AATGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTC 862 0.21183056503714406 No Hit AAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCT 742 0.18234139125007065 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 624 0.1533437036927818 No Hit AAAAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT 501 0.12311730056103153 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 499 0.12262581433124697 No Hit AATGATACGGCGACCACCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTT 477 0.11721946580361683 No Hit CCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 451 0.1108301448164176 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 421 0.10345785136964925 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATG 412 0.10124616333561874 No Hit AATGATACCTGTCTCTTCTACACATCTGACGCTAGCAGAGTCGTATGCCGT 408 0.10026319087604962 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.91486229784557E-4 0.0 0.0 1.1584330436022008 0.0 2 4.91486229784557E-4 0.0 0.0 1.4874830744429617 0.0 3 4.91486229784557E-4 0.0 0.0 2.3158831147448327 0.0 4 4.91486229784557E-4 0.0 0.0 6.131044973447456 0.0 5 4.91486229784557E-4 0.0 0.0 6.685195697529545 0.0 6 4.91486229784557E-4 0.0 0.0 8.626812048293436 0.0 7 4.91486229784557E-4 0.0 0.0 10.190966974582789 0.0 8 4.91486229784557E-4 0.0 0.0 11.20047969056027 0.0 9 4.91486229784557E-4 0.0 0.0 14.433476110083086 0.0 10 4.91486229784557E-4 0.0 0.0 16.05390620968277 0.0 11 4.91486229784557E-4 0.0 0.0 20.027572377490912 0.0 12 4.91486229784557E-4 0.0 0.0 21.010299093945136 0.0 13 4.91486229784557E-4 0.0 0.0 21.55462009343153 0.0 14 4.91486229784557E-4 0.0 0.0 22.32133861189544 0.0 15 4.91486229784557E-4 0.0 0.0 22.71256165080395 0.0 16 4.91486229784557E-4 0.0 0.0 23.290057970800802 0.0 17 4.91486229784557E-4 0.0 0.0 23.98428227037149 0.0 18 4.91486229784557E-4 0.0 0.0 25.416964630193473 0.0 19 4.91486229784557E-4 0.0 0.0 25.887316952097294 0.0 20 4.91486229784557E-4 0.0 0.0 26.331866246937427 0.0 21 4.91486229784557E-4 0.0 0.0 26.8292503114794 0.0 22 4.91486229784557E-4 0.0 0.0 27.30500898191085 0.0 23 4.91486229784557E-4 0.0 0.0 27.800672844648574 0.0 24 4.91486229784557E-4 0.0 0.0 28.116698490400044 0.0 25 4.91486229784557E-4 0.0 0.0 28.400777531215518 0.0 26 4.91486229784557E-4 0.0 0.0 28.691491636133083 0.0 27 4.91486229784557E-4 0.0 0.0 29.024719299927014 0.0 28 4.91486229784557E-4 0.0 0.0 29.332389679772145 0.0 29 4.91486229784557E-4 0.0 0.0 29.665125857336292 0.0 30 4.91486229784557E-4 0.0 0.0 30.145307903835803 0.0 31 7.372293446768355E-4 0.0 0.0 30.443394302200137 0.0 32 7.372293446768355E-4 0.0 0.0 30.716660645960353 0.0 33 7.372293446768355E-4 0.0 0.0 31.02998311744801 0.0 34 7.372293446768355E-4 0.0 0.0 31.28678467251044 0.0 35 7.372293446768355E-4 0.0 0.0 31.62246976745329 0.0 36 7.372293446768355E-4 0.0 0.0 31.931614605987775 0.0 37 7.372293446768355E-4 0.0 0.0 32.18669595924596 0.0 38 7.372293446768355E-4 0.0 0.0 32.49633228401023 0.0 39 7.372293446768355E-4 0.0 0.0 32.77574220564275 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGGGTA 45 3.8380676E-10 45.000004 5 AAGCACG 45 3.8380676E-10 45.000004 1 TTCGCGG 30 2.1620326E-6 45.000004 2 AGGGCGT 30 2.1620326E-6 45.000004 6 CCGCATC 30 2.1620326E-6 45.000004 20 GCCAACG 30 2.1620326E-6 45.000004 1 CGCTTAG 30 2.1620326E-6 45.000004 1 CTTACCG 30 2.1620326E-6 45.000004 1 CGGGTCA 35 1.2093369E-7 45.0 6 CGAACAG 20 7.02791E-4 45.0 1 CTGTACG 20 7.02791E-4 45.0 1 GGTAAAG 20 7.02791E-4 45.0 9 CGCGGGT 35 1.2093369E-7 45.0 4 CCGATCA 20 7.02791E-4 45.0 17 GGCCGAT 40 6.7957444E-9 45.0 8 TTCGTCG 20 7.02791E-4 45.0 37 TCGATTA 20 7.02791E-4 45.0 15 CGCTACG 40 6.7957444E-9 45.0 1 GCGGGTT 40 6.7957444E-9 45.0 5 GGAACGT 20 7.02791E-4 45.0 8 >>END_MODULE