##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548697_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 414391 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.207535877951017 31.0 31.0 33.0 30.0 34.0 2 31.492409342867003 31.0 31.0 34.0 30.0 34.0 3 31.615672155041977 31.0 31.0 34.0 30.0 34.0 4 35.48965349150923 37.0 35.0 37.0 33.0 37.0 5 34.77257710712829 35.0 35.0 37.0 32.0 37.0 6 34.9039288980697 35.0 35.0 37.0 32.0 37.0 7 34.816914460014814 35.0 35.0 37.0 32.0 37.0 8 35.22086387011301 37.0 35.0 37.0 33.0 37.0 9 36.78785012222756 39.0 37.0 39.0 33.0 39.0 10 36.20713046374077 37.0 35.0 39.0 32.0 39.0 11 36.387749733946926 38.0 35.0 39.0 32.0 39.0 12 36.089659283140804 37.0 35.0 39.0 32.0 39.0 13 35.9643404417567 37.0 35.0 39.0 31.0 39.0 14 36.93585526712694 39.0 36.0 40.0 31.0 41.0 15 36.981712923301906 38.0 36.0 40.0 32.0 41.0 16 36.75358779510173 38.0 35.0 40.0 31.0 41.0 17 36.72070339365479 38.0 35.0 40.0 31.0 41.0 18 36.520112647234136 38.0 35.0 40.0 31.0 41.0 19 36.57914385206242 38.0 35.0 40.0 31.0 41.0 20 36.64139182559467 38.0 35.0 40.0 31.0 41.0 21 36.87273613567862 39.0 35.0 40.0 31.0 41.0 22 36.86584409410436 39.0 35.0 40.0 31.0 41.0 23 36.78221776052086 39.0 35.0 40.0 31.0 41.0 24 36.351431377611966 38.0 35.0 40.0 30.0 41.0 25 36.56472268944065 38.0 35.0 40.0 31.0 41.0 26 36.372744581808 38.0 35.0 40.0 30.0 41.0 27 36.3194181340811 38.0 35.0 40.0 30.0 41.0 28 36.282938094698004 38.0 35.0 40.0 30.0 41.0 29 35.85356342198551 38.0 34.0 40.0 29.0 41.0 30 36.09539541157989 38.0 35.0 40.0 30.0 41.0 31 35.88041728705498 38.0 35.0 40.0 29.0 41.0 32 35.8002466269779 38.0 34.0 40.0 29.0 41.0 33 35.81309439635513 38.0 35.0 40.0 29.0 41.0 34 35.56676423957084 38.0 34.0 40.0 28.0 41.0 35 35.71130164506469 38.0 34.0 40.0 29.0 41.0 36 35.43151033685577 38.0 34.0 40.0 27.0 41.0 37 35.42815601690191 38.0 34.0 40.0 28.0 41.0 38 35.397325231484274 38.0 34.0 40.0 28.0 41.0 39 35.13712653025765 38.0 34.0 40.0 26.0 41.0 40 34.965725606975056 37.0 33.0 40.0 26.0 41.0 41 34.98662133106173 37.0 33.0 40.0 26.0 41.0 42 35.09584426302695 38.0 34.0 40.0 27.0 41.0 43 35.0853324517183 38.0 34.0 40.0 26.0 41.0 44 35.11583745785985 37.0 34.0 40.0 27.0 41.0 45 34.87260099760854 37.0 33.0 40.0 26.0 41.0 46 34.74102960730325 37.0 33.0 40.0 26.0 41.0 47 34.674628551295754 37.0 33.0 40.0 26.0 41.0 48 34.72827112557947 37.0 33.0 40.0 26.0 41.0 49 34.61700423030423 37.0 33.0 40.0 26.0 41.0 50 34.48683248429623 37.0 33.0 40.0 25.0 41.0 51 33.14849984676308 35.0 31.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 7.0 11 4.0 12 7.0 13 8.0 14 23.0 15 26.0 16 67.0 17 129.0 18 251.0 19 505.0 20 913.0 21 1397.0 22 1885.0 23 2252.0 24 2693.0 25 3264.0 26 3724.0 27 4556.0 28 6068.0 29 7972.0 30 10639.0 31 14264.0 32 18872.0 33 26033.0 34 38006.0 35 42353.0 36 47170.0 37 61411.0 38 73414.0 39 46475.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.943418172691974 40.081227632839514 18.358265502870477 24.61708869159803 2 20.53036866148155 39.34110538114969 17.736630380486062 22.391895576882703 3 18.042138946067844 28.101237719931177 29.0061801535265 24.85044318047448 4 26.02252462046714 28.64251395421233 18.462997507185243 26.87196391813529 5 15.778817590150366 39.38767975173206 18.833661927985887 25.999840730131684 6 19.500423513058923 32.888503852641584 26.832146451057092 20.778926183242397 7 72.49385242440111 13.068816649010234 8.36311599431455 6.074214932274109 8 74.25523237715105 4.911062257626251 6.368864188652745 14.464841176569953 9 72.7076601567119 8.321367983378018 11.694993375821387 7.275978484088699 10 33.44329389393109 33.19521900813483 15.027353393292808 18.33413370464127 11 24.929112842701702 24.625534820978253 29.088228267505812 21.357124068814237 12 27.09276987193255 21.547523956842692 34.65736466284258 16.70234150838218 13 24.612986285899066 30.360215352167398 24.342951463714222 20.683846898219315 14 15.910094572517261 29.94707896648335 34.21430484735431 19.928521613645085 15 13.590787444708017 30.749461257604533 29.659186613608885 26.000564684078565 16 16.256385877106403 27.470432514219663 32.97537832626674 23.297803282407195 17 14.794240222398653 27.80248605785357 29.205508806899765 28.19776491284801 18 18.072062375872065 27.104353135082565 28.087241276958235 26.73634321208713 19 18.857311090250512 31.567770535557 29.703830440332922 19.87108793385957 20 20.82574187180706 31.91068338839405 26.405496258364686 20.8580784814342 21 17.5373017271128 28.91110086850342 28.938611118484715 24.612986285899066 22 17.494105808282516 29.9576969577042 27.16757844644309 25.380618787570192 23 19.521659495500625 29.176550649024712 23.193312596074723 28.10847725939994 24 15.203515520366032 34.93536297844307 27.19388210651293 22.667239394677974 25 17.66133917001093 26.55969844904933 28.401678607884822 27.377283773054916 26 21.018072303693856 31.87376173710336 23.056002664150522 24.052163295052257 27 16.950175076196153 28.310701728560705 28.133574329558314 26.605548865684824 28 19.126621958488478 27.292339843288104 30.14327048608681 23.437767712136605 29 18.32858339104855 33.791757060360865 26.621234534533812 21.258425014056773 30 25.133267855720803 25.6151798663581 25.66682191456861 23.584730363352485 31 22.939204760721154 31.819706509069935 21.531838287993708 23.7092504422152 32 23.774164979451772 29.21226571040394 22.13971828538747 24.873851024756814 33 25.980052655583734 26.07971698227037 25.606975054960166 22.333255307185727 34 17.11789107388915 32.54703890769829 24.38687133649138 25.94819868192118 35 25.23341481837202 25.1455750728177 27.821550178454647 21.79945993035563 36 22.41264892335982 30.041192979577257 26.317415194828076 21.228742902234846 37 24.3284723847767 30.251622260135957 21.89067812766204 23.529227227425306 38 24.79300950068896 27.23587143543175 25.279023917025224 22.692095146854058 39 20.250439802022726 30.575229674389647 25.966780166557673 23.207550357029955 40 27.90166774857562 26.641263927064053 23.04634994485884 22.410718379501485 41 20.058109370135934 24.9870291584518 31.303527344947163 23.651334126465102 42 26.507573764874238 25.60070078742058 23.339309975361434 24.552415472343753 43 21.833727083841108 25.154262520180215 27.71078522458258 25.301225171396098 44 21.75554005757847 23.478067815179386 26.3623003395344 28.404091787707745 45 26.12411949101211 26.936395819407277 25.416092530967134 21.523392158613483 46 19.231112644820954 25.062320368926933 34.065170334297804 21.641396651954313 47 22.796827151168824 27.19943242010565 25.186116493842768 24.817623934882754 48 20.466178078191852 23.08544345799016 33.47466523162906 22.97371323218892 49 23.608620843599404 22.012785026701835 29.512947916339883 24.86564621335888 50 21.012280672118845 22.165297991510432 27.580232196162562 29.242189140208165 51 18.84524519113591 22.41482078520045 33.550921714033365 25.189012309630275 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2526.0 1 2046.0 2 1566.0 3 1056.5 4 547.0 5 757.5 6 968.0 7 910.0 8 852.0 9 814.5 10 777.0 11 752.0 12 727.0 13 770.0 14 813.0 15 842.5 16 872.0 17 861.5 18 851.0 19 839.5 20 828.0 21 978.5 22 1129.0 23 1369.0 24 1609.0 25 2027.0 26 2875.5 27 3306.0 28 3810.0 29 4314.0 30 5054.5 31 5795.0 32 6713.0 33 7631.0 34 8729.5 35 9828.0 36 11241.0 37 12654.0 38 12892.0 39 13130.0 40 14688.0 41 16246.0 42 19161.5 43 22077.0 44 37003.5 45 51930.0 46 51792.5 47 51655.0 48 49021.5 49 46388.0 50 42654.0 51 38920.0 52 34821.5 53 30723.0 54 25822.0 55 20921.0 56 18511.0 57 16101.0 58 14677.0 59 13253.0 60 11609.5 61 9966.0 62 8438.0 63 6910.0 64 5983.5 65 5057.0 66 4209.0 67 3361.0 68 3056.0 69 2751.0 70 2252.5 71 1754.0 72 1526.5 73 1299.0 74 1134.0 75 733.0 76 497.0 77 352.5 78 208.0 79 168.0 80 128.0 81 90.5 82 53.0 83 45.0 84 37.0 85 22.0 86 7.0 87 5.5 88 4.0 89 4.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 414391.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.04347491160824 #Duplication Level Percentage of deduplicated Percentage of total 1 78.37861030821354 26.682802536343868 2 8.428445613899067 5.738671536012549 3 3.031195601838777 3.0957729427012697 4 1.5559173624101674 2.1187533476698484 5 1.0296539224245291 1.7526498737849239 6 0.7766193820011573 1.586329346821506 7 0.5970336416284941 1.4227569860116025 8 0.5092812114465669 1.3870161715867724 9 0.46581995801910714 1.427231704873489 >10 4.929465857419162 35.621891127409704 >50 0.23111234063799868 4.933031671650713 >100 0.056178076647390454 3.592347105836234 >500 0.003555574471353826 0.7853341877035341 >1k 0.004977804259895357 3.574674665730698 >5k 0.002133344682812296 6.280736795863283 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCC 9568 2.308930454570683 No Hit AATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCT 8273 1.9964236675024314 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGT 8103 1.9553996105127764 No Hit CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT 3818 0.9213520563911861 No Hit AATGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT 2246 0.5420001882280262 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2174 0.5246252935029959 No Hit AATGATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCT 1930 0.4657437058237269 No Hit AACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTG 1703 0.4109645238434233 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTAT 1514 0.3653554251902189 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGCAGAGTC 1381 0.3332601335453714 No Hit AATGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTC 872 0.21042928055869942 No Hit AAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCT 708 0.17085313146279724 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 623 0.15034110296796988 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 532 0.12838116657939 No Hit AAAAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT 509 0.12283085298667201 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATG 493 0.11896976526999863 No Hit CCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 476 0.11486735957103315 No Hit AATGATACCTGTCTCTTCTACACATCTGACGCTAGCAGAGTCGTATGCCGT 443 0.1069038661553943 No Hit AATGATACGGCGACCACCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTT 442 0.10666254817310221 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 429 0.1035254144033051 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1998330079562538 0.0 2 0.0 0.0 0.0 1.53478236737767 0.0 3 0.0 0.0 0.0 2.407629509328147 0.0 4 0.0 0.0 0.0 6.27450885757654 0.0 5 0.0 0.0 0.0 6.82857494491917 0.0 6 0.0 0.0 0.0 8.83392737776641 0.0 7 0.0 0.0 0.0 10.45896267052132 0.0 8 0.0 0.0 0.0 11.513763571120029 0.0 9 0.0 0.0 0.0 14.857465533759179 0.0 10 0.0 0.0 0.0 16.50011703922141 0.0 11 0.0 0.0 0.0 20.634135393867144 0.0 12 0.0 0.0 0.0 21.580825838399 0.0 13 0.0 0.0 0.0 22.13561587968851 0.0 14 0.0 0.0 0.0 22.920864594066956 0.0 15 0.0 0.0 0.0 23.3098691815218 0.0 16 0.0 0.0 0.0 23.89506528858011 0.0 17 0.0 0.0 0.0 24.612744967916775 0.0 18 2.4131798229208646E-4 0.0 0.0 26.096367923048522 0.0 19 2.4131798229208646E-4 0.0 0.0 26.586967381048332 0.0 20 2.4131798229208646E-4 0.0 0.0 27.046678137314757 0.0 21 2.4131798229208646E-4 0.0 0.0 27.542586590924994 0.0 22 2.4131798229208646E-4 0.0 0.0 28.030772869101888 0.0 23 2.4131798229208646E-4 0.0 0.0 28.532714272269427 0.0 24 4.8263596458417293E-4 0.0 0.0 28.858252230381453 0.0 25 4.8263596458417293E-4 0.0 0.0 29.141318223610067 0.0 26 4.8263596458417293E-4 0.0 0.0 29.426797396661605 0.0 27 4.8263596458417293E-4 0.0 0.0 29.7624707100299 0.0 28 4.8263596458417293E-4 0.0 0.0 30.062911597983547 0.0 29 4.8263596458417293E-4 0.0 0.0 30.38482978636119 0.0 30 4.8263596458417293E-4 0.0 0.0 30.87180947462662 0.0 31 4.8263596458417293E-4 0.0 0.0 31.175387496350066 0.0 32 4.8263596458417293E-4 0.0 0.0 31.459901397472436 0.0 33 4.8263596458417293E-4 0.0 0.0 31.75551592578024 0.0 34 4.8263596458417293E-4 0.0 0.0 32.01131298700985 0.0 35 4.8263596458417293E-4 0.0 0.0 32.32743954381249 0.0 36 4.8263596458417293E-4 0.0 0.0 32.616779804580695 0.0 37 4.8263596458417293E-4 0.0 0.0 32.885849354836374 0.0 38 4.8263596458417293E-4 0.0 0.0 33.17687884148063 0.0 39 7.239539468762594E-4 0.0 0.0 33.46694305619572 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGGAT 20 7.028059E-4 45.0 26 CGGGTCA 20 7.028059E-4 45.0 6 CGGGTAT 80 0.0 45.0 6 CGGGTAG 35 1.2094097E-7 45.0 6 CTCACGG 50 2.1827873E-11 45.0 2 CGAACAG 25 3.8864724E-5 45.0 1 CGAGTAT 35 1.2094097E-7 45.0 16 CGAGTAG 35 1.2094097E-7 45.0 1 CGTGCGG 25 3.8864724E-5 45.0 2 TCCGAGT 35 1.2094097E-7 45.0 14 GCGAAAA 20 7.028059E-4 45.0 29 TCTTACG 20 7.028059E-4 45.0 1 GCCGGGT 20 7.028059E-4 45.0 4 ACGGGTA 70 0.0 45.0 5 TAGCCGT 25 3.8864724E-5 45.0 44 ACGGGCC 40 6.7975634E-9 45.0 5 TGCATCG 20 7.028059E-4 45.0 1 ATCCGCG 20 7.028059E-4 45.0 1 GTAGCCG 25 3.8864724E-5 45.0 43 CTAACCG 25 3.8864724E-5 45.0 1 >>END_MODULE