SRR3548674_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548674_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	338042
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3050	0.9022547494098367	No Hit
CTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGCT	2975	0.8800681572112341	No Hit
AATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	2414	0.7141124475656871	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCC	1978	0.5851343915844777	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGT	1719	0.5085166931919702	No Hit
AAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	1143	0.3381236651067027	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTT	991	0.29315883825086825	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	680	0.20115843593399638	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	597	0.17660527390087624	No Hit
AACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTG	551	0.1629974973524	No Hit
AATGCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTC	534	0.15796853645405007	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCT	508	0.1502771844918679	No Hit
AATGACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTT	495	0.14643150851077677	No Hit
AATGATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCT	455	0.13459865933818874	No Hit
CCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGC	425	0.12572402245874773	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	383	0.1132995308275303	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	355	0.10501653640671868	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACCGAA	35	1.2085184E-7	45.000004	9
CCATAGG	35	1.2085184E-7	45.000004	2
CGGACCG	35	1.2085184E-7	45.000004	1
AGCGTTC	20	7.026214E-4	45.0	25
CCGGGTA	95	0.0	45.0	5
ATTAGTA	20	7.026214E-4	45.0	17
CCTACTC	20	7.026214E-4	45.0	38
GCACGGT	20	7.026214E-4	45.0	9
CGCGCCT	45	3.8380676E-10	45.0	17
CAATTGC	20	7.026214E-4	45.0	21
TGCGGGT	20	7.026214E-4	45.0	4
TCGGATG	20	7.026214E-4	45.0	20
AATGCGG	20	7.026214E-4	45.0	2
GTAGATA	20	7.026214E-4	45.0	13
CGGATGT	20	7.026214E-4	45.0	21
CTAAAAG	20	7.026214E-4	45.0	1
AGTTGAC	20	7.026214E-4	45.0	28
CACTACG	20	7.026214E-4	45.0	1
GGTGCGT	20	7.026214E-4	45.0	27
CGTACAG	20	7.026214E-4	45.0	1