SRR3548673_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548673_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	342901
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3080	0.898218436225033	No Hit
CTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGCT	2963	0.864097800822978	No Hit
AATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	2558	0.7459879090466345	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCC	2198	0.6410013385787734	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGT	1792	0.5225998174400192	No Hit
AAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	1176	0.3429561301950126	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTT	942	0.2747148593909029	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	683	0.19918285452652515	No Hit
AACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTG	616	0.17964368724500657	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	601	0.1752692468088457	No Hit
AATGACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTT	560	0.16331244295000596	No Hit
AATGCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTC	551	0.16068777868830944	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCT	545	0.1589380025138451	No Hit
AATGATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCT	484	0.14114861140679089	No Hit
CCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGC	445	0.1297750662727726	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	421	0.12277596157491522	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	372	0.10848612281678968	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	30	2.1610304E-6	45.000004	1
CCTAAGA	30	2.1610304E-6	45.000004	9
AGTACCC	30	2.1610304E-6	45.000004	15
TAGTCCG	30	2.1610304E-6	45.000004	1
TCGCGCA	30	2.1610304E-6	45.000004	34
CTAGACG	20	7.0263556E-4	45.0	1
CTATGCA	20	7.0263556E-4	45.0	20
CCGGGCC	45	3.8380676E-10	45.0	5
ATTAGTC	20	7.0263556E-4	45.0	11
GCGACGA	20	7.0263556E-4	45.0	13
ATCTACG	25	3.8850623E-5	45.0	1
CCCTATA	20	7.0263556E-4	45.0	11
TTTCGTG	20	7.0263556E-4	45.0	29
CTATATC	20	7.0263556E-4	45.0	13
CGTTCTA	40	6.7902874E-9	45.0	27
CATTCGC	20	7.0263556E-4	45.0	22
GGCCCTA	20	7.0263556E-4	45.0	9
TACATTG	25	3.8850623E-5	45.0	1
AATGCGG	20	7.0263556E-4	45.0	2
GTAGCCG	20	7.0263556E-4	45.0	43