SRR3548672_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548672_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475286
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCC	9426	1.9832269412522145	No Hit
AATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCT	8449	1.7776664997496243	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGT	7607	1.6005100087105448	No Hit
CTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGCT	4798	1.0094974394364657	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3845	0.8089865891273886	No Hit
AATGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTT	1999	0.42058886649301686	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCT	1976	0.4157496749325669	No Hit
AACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTG	1881	0.39576170979157815	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTAT	1524	0.3206490407880729	No Hit
AAACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCT	1280	0.2693115303206911	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCTGAATC	1136	0.2390139831596134	No Hit
AATGCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTC	963	0.20261484663970747	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTT	940	0.19777565507925754	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	863	0.18157488333340346	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	726	0.152750133603767	No Hit
CCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGC	666	0.1401261556199846	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	603	0.12687097873701308	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCT	503	0.10583101543070908	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTC	25	3.8873404E-5	45.000004	23
AGACTCG	20	7.0291053E-4	45.000004	44
CGGCGGA	20	7.0291053E-4	45.000004	17
CCTAGCG	30	2.1628039E-6	45.000004	1
CGTGATA	20	7.0291053E-4	45.000004	45
AACCACT	20	7.0291053E-4	45.000004	35
ATTACGG	30	2.1628039E-6	45.000004	2
TCTTACG	25	3.8873404E-5	45.000004	1
CTCCCGT	20	7.0291053E-4	45.000004	15
TCGGGTA	35	1.209919E-7	45.000004	5
GCACGCG	30	2.1628039E-6	45.000004	1
ATTCGGC	20	7.0291053E-4	45.000004	10
TTTCCGA	20	7.0291053E-4	45.000004	16
CGTTCGC	30	2.1628039E-6	45.000004	18
TCGGCAA	20	7.0291053E-4	45.000004	12
CGCCTTG	20	7.0291053E-4	45.000004	19
AGTGCGC	25	3.8873404E-5	45.000004	13
GCATTAG	30	2.1628039E-6	45.000004	1
GAGCGTT	25	3.8873404E-5	45.000004	22
CTACGCA	35	1.209919E-7	45.000004	13