SRR3548664_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548664_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	217007
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2179	1.004115074628929	No Hit
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	1926	0.8875289737197417	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCC	1232	0.567723621818651	No Hit
AATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCT	1199	0.5525167390913658	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGT	1140	0.525328676033492	No Hit
AAACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCT	623	0.2870875133060224	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	518	0.2387019773555692	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTT	434	0.1999935485952066	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	406	0.18709073900841908	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	337	0.15529452966954982	No Hit
AACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTG	302	0.13916601768606543	No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	291	0.13409705677697034	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCT	258	0.11889017404968502	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	256	0.11796854479348594	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCT	254	0.11704691553728681	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTT	252	0.1161252862810877	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTAT	222	0.10230084743810108	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.02063E-4	45.0	1
TCCGCGG	20	7.02063E-4	45.0	2
ACGTTAG	20	7.02063E-4	45.0	1
ATGGCAG	25	3.8803177E-5	45.0	1
GAACTAT	20	7.02063E-4	45.0	15
CAACCGG	35	1.2058445E-7	45.0	2
TGAACGG	20	7.02063E-4	45.0	2
ATTCGGG	25	3.8803177E-5	45.0	3
TGAGTTA	20	7.02063E-4	45.0	10
TAACGTG	25	3.8803177E-5	45.0	1
ACGGGCG	35	1.2058445E-7	45.0	5
ATCCGCG	20	7.02063E-4	45.0	1
GTTACGG	40	6.7702786E-9	45.0	2
AACGGGC	25	3.8803177E-5	45.0	4
CTAACGG	25	3.8803177E-5	45.0	2
TCTACGA	25	3.8803177E-5	45.0	22
TACGACG	20	7.02063E-4	45.0	1
TCTAAGG	20	7.02063E-4	45.0	2
ACTACGG	20	7.02063E-4	45.0	2
TAGGGTC	40	6.7702786E-9	45.0	5