##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548656_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 178090 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.86238980290864 31.0 30.0 33.0 28.0 34.0 2 31.13502161828289 31.0 31.0 34.0 30.0 34.0 3 31.244303442079847 31.0 31.0 34.0 30.0 34.0 4 35.217816834184966 35.0 35.0 37.0 33.0 37.0 5 34.34538716379359 35.0 35.0 37.0 30.0 37.0 6 34.58371609860183 35.0 35.0 37.0 32.0 37.0 7 33.99664214722893 35.0 35.0 37.0 30.0 37.0 8 34.623752035487676 35.0 35.0 37.0 32.0 37.0 9 36.23333146162053 37.0 35.0 39.0 32.0 39.0 10 35.83047335616823 37.0 35.0 39.0 31.0 39.0 11 35.995243977764055 37.0 35.0 39.0 31.0 39.0 12 35.31683418496266 37.0 34.0 39.0 30.0 39.0 13 35.048436183951935 37.0 34.0 39.0 30.0 39.0 14 35.8911673872761 38.0 34.0 40.0 29.0 41.0 15 36.21796282778371 38.0 35.0 40.0 31.0 41.0 16 35.78410354315234 37.0 34.0 40.0 30.0 41.0 17 35.757499017350774 37.0 34.0 40.0 30.0 41.0 18 35.459700151608736 37.0 34.0 40.0 28.0 41.0 19 35.20464371946768 37.0 33.0 40.0 27.0 41.0 20 35.444174293896346 37.0 34.0 40.0 29.0 41.0 21 35.830512662137124 37.0 34.0 40.0 30.0 41.0 22 35.59696221011848 37.0 34.0 40.0 29.0 41.0 23 35.58162726711213 37.0 34.0 40.0 29.0 41.0 24 34.99049918580493 37.0 33.0 39.0 27.0 41.0 25 35.3419787747768 37.0 34.0 40.0 28.0 41.0 26 35.11879386826885 37.0 34.0 40.0 27.0 41.0 27 35.071357178954464 37.0 33.0 40.0 27.0 41.0 28 35.15171542478522 37.0 34.0 40.0 27.0 41.0 29 34.69866359705767 37.0 33.0 40.0 25.0 41.0 30 34.955415800999496 37.0 34.0 40.0 27.0 41.0 31 34.63430849570442 37.0 33.0 40.0 25.0 40.0 32 34.43558313212421 37.0 33.0 40.0 25.0 41.0 33 34.62815991914201 37.0 33.0 40.0 25.0 41.0 34 34.47677578752316 37.0 33.0 40.0 25.0 41.0 35 34.43120332416194 37.0 33.0 40.0 25.0 41.0 36 34.47906114885732 37.0 33.0 40.0 25.0 41.0 37 34.338143635240606 37.0 33.0 40.0 24.0 40.0 38 34.10389129092032 36.0 33.0 39.0 24.0 40.0 39 33.9268347464765 36.0 33.0 39.0 23.0 40.0 40 33.32285361334157 36.0 32.0 39.0 21.0 40.0 41 33.71187040260543 36.0 33.0 39.0 23.0 40.0 42 33.63231512156775 36.0 33.0 39.0 23.0 40.0 43 33.877932506036274 36.0 33.0 39.0 23.0 40.0 44 33.863445448930314 36.0 33.0 39.0 23.0 40.0 45 33.313145039025216 35.0 32.0 39.0 21.0 40.0 46 33.27378853388736 35.0 32.0 39.0 22.0 40.0 47 33.17638272783424 35.0 32.0 39.0 22.0 40.0 48 33.33827278342411 35.0 32.0 39.0 22.0 40.0 49 33.19605817283396 36.0 32.0 39.0 21.0 40.0 50 33.097866247403 35.0 32.0 39.0 21.0 40.0 51 31.504323656578133 35.0 28.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 4.0 11 2.0 12 3.0 13 9.0 14 7.0 15 22.0 16 33.0 17 89.0 18 190.0 19 394.0 20 721.0 21 1092.0 22 1466.0 23 1662.0 24 1907.0 25 2120.0 26 2329.0 27 2820.0 28 3653.0 29 4538.0 30 6143.0 31 8281.0 32 10866.0 33 14046.0 34 20177.0 35 20958.0 36 19932.0 37 23053.0 38 21807.0 39 9761.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 14.160817564152955 53.59312707058229 13.290471110112865 18.955584255151887 2 14.280420012353304 55.1715424785221 14.879555281037677 15.668482228086923 3 14.567915099107193 25.775731371778317 42.380818687180636 17.275534841933855 4 35.3034982312314 25.83356729743388 15.674097366500083 23.188837104834633 5 12.193273064181032 48.26436071649166 18.907855578640014 20.634510640687292 6 18.70683362344882 27.88309281823797 36.81790106126116 16.59217249705205 7 48.835420293110225 28.063338761300464 14.106350721545285 8.994890224044022 8 51.231961367847724 8.824190016283902 9.45477006008198 30.4890785557864 9 59.89780448088046 10.10163400527823 17.903307316525353 12.097254197315964 10 38.20708630467741 23.437587736537704 18.475489920826547 19.879836037958334 11 27.868493458363748 19.846145207479367 26.774664495479815 25.51069683867707 12 25.460160592958616 20.522207872424055 40.43629625470268 13.581335279914649 13 22.521197147509685 35.98349149306531 19.69341344264136 21.80189791678365 14 9.961255544949182 29.72317367623112 43.283732944017075 17.031837834802626 15 8.319389072940648 29.87253635802122 27.834802627884773 33.97327194115335 16 9.514290527261497 28.140266157560784 39.38121174686956 22.964231568308158 17 10.040428996574766 27.36144645965523 29.56538828682127 33.03273625694874 18 12.730080296479308 28.641698017856136 26.61407153686338 32.01415014880117 19 15.593239373350553 31.108428322758158 36.6421472289292 16.6561850749621 20 18.091975967207592 38.82025941939469 23.503846369813015 19.583918243584705 21 12.598124543770004 27.48666404626874 30.20495255208041 29.710258857880845 22 13.12931663765512 37.577629288561965 26.799371104497727 22.493682969285192 23 20.038744455050818 27.268235161996746 19.63164692009658 33.06137346285586 24 10.850693469594026 43.187714077152 23.386489976977934 22.57510247627604 25 13.84636981301589 24.412937278903925 29.117861755292267 32.62283115278792 26 20.629457016115445 34.237183446571954 20.564882924364085 24.56847661294851 27 10.528384524678533 29.713627940928745 33.343814925037904 26.414172609354818 28 21.42736818462575 22.350496939749565 24.816665730810264 31.40546914481442 29 13.239373350553091 31.68847212083778 37.16154753214666 17.910606996462462 30 20.750744005839746 22.251670503677914 27.016115447245774 29.981470043236563 31 32.62620023583581 29.270593520130273 19.37840417766298 18.724802066370934 32 18.42832275815599 21.895670728283452 28.32219664214723 31.35380987141333 33 26.933572912572295 21.404907630973103 20.582851367286203 31.0786680891684 34 23.18209893873884 21.160649110000563 28.299174574653264 27.35807737660733 35 15.576393958111067 26.071649166151943 28.79442978269414 29.557527093042847 36 27.16098601830535 18.290190353192205 37.1593014767814 17.38952215172104 37 19.17682070863047 24.599359874220898 33.26857207030153 22.9552473468471 38 28.78993767196361 24.006401257791005 23.526306923465665 23.67735414677972 39 23.907574821719354 19.84109158290752 35.56404065360211 20.687292941771016 40 20.969172890111743 29.712504913246114 19.889381773260713 29.428940423381437 41 25.49216688191364 17.325509573810994 34.33600988264361 22.846313661631758 42 24.74647650064574 26.993654893593128 20.818687180639003 27.44118142512213 43 21.72665506204728 19.085855466337247 32.73962603178168 26.447863439833792 44 19.064517940367228 18.15542703127632 29.692851928800046 33.087203099556405 45 32.62676174967713 27.22219102700882 21.43972148913471 18.711325734179347 46 15.409062833398842 19.16895951485204 45.13167499578864 20.290302655960467 47 23.466786456286147 24.671795159750687 21.14043461171318 30.720983772249987 48 20.230220674939638 16.17384468527149 41.327418720871464 22.2685159189174 49 23.99348643944073 17.254758829805155 31.275197933629062 27.476556797125053 50 20.51266213712168 18.622045033410075 25.113145039025213 35.75214779044303 51 15.353472963108542 17.59559773148408 40.26840361614914 26.78252568925824 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2835.0 1 2213.0 2 1591.0 3 1077.5 4 564.0 5 560.0 6 556.0 7 542.0 8 528.0 9 491.0 10 454.0 11 495.5 12 537.0 13 551.0 14 565.0 15 583.0 16 601.0 17 613.0 18 625.0 19 626.5 20 628.0 21 594.5 22 561.0 23 630.5 24 700.0 25 953.5 26 1129.0 27 1051.0 28 1005.0 29 959.0 30 1029.0 31 1099.0 32 1253.0 33 1407.0 34 1566.0 35 1725.0 36 1924.0 37 2123.0 38 2592.5 39 3062.0 40 3682.0 41 4302.0 42 6919.5 43 9537.0 44 23367.0 45 37197.0 46 34609.5 47 32022.0 48 26830.5 49 21639.0 50 17706.5 51 13774.0 52 11712.5 53 9651.0 54 8131.5 55 6612.0 56 5815.0 57 5018.0 58 4376.5 59 3735.0 60 3514.0 61 3293.0 62 2965.5 63 2638.0 64 2073.5 65 1509.0 66 1419.0 67 1329.0 68 1058.5 69 788.0 70 667.0 71 546.0 72 448.0 73 350.0 74 318.0 75 249.0 76 212.0 77 162.0 78 112.0 79 89.0 80 66.0 81 64.0 82 62.0 83 43.5 84 25.0 85 15.0 86 5.0 87 4.0 88 3.0 89 2.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 178090.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.52237632657645 #Duplication Level Percentage of deduplicated Percentage of total 1 81.90284757118927 27.455780784996346 2 7.876046901172529 5.280476163737436 3 2.4974874371859297 2.5116514122073106 4 1.2981574539363483 1.7406929080801843 5 0.8073701842546064 1.3532483575720142 6 0.5510887772194305 1.108428322758156 7 0.4673366834170854 1.096636532090516 8 0.39195979899497485 1.0511539109439048 9 0.3869346733668342 1.1673872760963557 >10 3.6398659966499167 24.710539614801505 >50 0.09045226130653267 2.1534055814475828 >100 0.06700167504187605 4.669549104385423 >500 0.006700167504187606 1.475096861137627 >1k 0.011725293132328308 8.314896962210119 >5k 0.003350083752093803 9.980347015553933 >10k+ 0.0016750418760469014 5.930709191981582 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCC 10562 5.930709191981582 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGT 9406 5.281599191420069 No Hit AATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT 8368 4.698747824133865 No Hit CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT 3424 1.9226233926666292 Illumina Single End Adapter 2 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2518 1.4138918524341624 No Hit AATGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTT 2309 1.2965354595990792 No Hit AATGATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCT 1926 1.081475658374979 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTAT 1622 0.9107754506148578 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGTCGATC 1593 0.8944915492166882 No Hit AACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG 1416 0.7951035993037229 No Hit AAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT 790 0.44359593463978886 No Hit AATGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC 698 0.39193666123869947 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 597 0.33522376326576453 No Hit AAAAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTT 542 0.30434050199337415 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATG 437 0.24538154865517436 No Hit AATGATACGGCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC 436 0.24482003481385817 No Hit AATCTGTCTCTTATACCCATCTGACGCCTTGTCGATCGTATGCCGTCTTCT 423 0.2375203548767477 No Hit AATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTA 420 0.23583581335279913 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 415 0.23302824414621817 No Hit AATGATACCTGTCTCTTCTACACATCTGACGCCTTGTCGATCGTATGCCGT 411 0.23078218878095344 No Hit AATGATACGGCGACCACCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTT 342 0.19203773373013644 No Hit CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC 312 0.17519231849065078 No Hit AATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTCTGCCGTCTTCT 288 0.16171598629906228 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCT 276 0.154977820203268 No Hit AATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCTTGTCGAT 269 0.15104722331405468 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGCTCGTATGCCGT 240 0.13476332191588522 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 230 0.12914818350272333 No Hit AATGATCCGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCC 222 0.12465607277219383 No Hit AATGATACGGCGACCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGT 203 0.11398730978718626 No Hit AATGATACGGCGACCACCTGTCTCTTATACACCTCTGACGCCTTGTCGATC 185 0.10388006064349486 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.615138413161884E-4 0.0 0.0 2.354427536638778 0.0 2 5.615138413161884E-4 0.0 0.0 2.8659666460778257 0.0 3 5.615138413161884E-4 0.0 0.0 4.300634510640688 0.0 4 5.615138413161884E-4 0.0 0.0 11.98158234600483 0.0 5 5.615138413161884E-4 0.0 0.0 12.85361334156887 0.0 6 5.615138413161884E-4 0.0 0.0 16.113201190409345 0.0 7 5.615138413161884E-4 0.0 0.0 18.683811555954854 0.0 8 5.615138413161884E-4 0.0 0.0 19.692851928800046 0.0 9 5.615138413161884E-4 0.0 0.0 26.91055084507833 0.0 10 5.615138413161884E-4 0.0 0.0 28.647874670110618 0.0 11 5.615138413161884E-4 0.0 0.0 37.253074288281205 0.0 12 5.615138413161884E-4 0.0 0.0 38.54062552641923 0.0 13 5.615138413161884E-4 0.0 0.0 39.369981470043236 0.0 14 5.615138413161884E-4 0.0 0.0 40.86136223257903 0.0 15 5.615138413161884E-4 0.0 0.0 41.468358695041836 0.0 16 5.615138413161884E-4 0.0 0.0 42.20281879948341 0.0 17 5.615138413161884E-4 0.0 0.0 42.90414958728733 0.0 18 5.615138413161884E-4 0.0 0.0 45.391094390476724 0.0 19 5.615138413161884E-4 0.0 0.0 45.98966814531978 0.0 20 5.615138413161884E-4 0.0 0.0 46.41417260935482 0.0 21 5.615138413161884E-4 0.0 0.0 46.889774832949634 0.0 22 5.615138413161884E-4 0.0 0.0 47.23342130383514 0.0 23 5.615138413161884E-4 0.0 0.0 47.59391318996013 0.0 24 5.615138413161884E-4 0.0 0.0 47.83480262788478 0.0 25 5.615138413161884E-4 0.0 0.0 48.047054859902296 0.0 26 5.615138413161884E-4 0.0 0.0 48.255938008871915 0.0 27 5.615138413161884E-4 0.0 0.0 48.48110505923971 0.0 28 5.615138413161884E-4 0.0 0.0 48.707956651131454 0.0 29 5.615138413161884E-4 0.0 0.0 48.92694704924477 0.0 30 5.615138413161884E-4 0.0 0.0 49.27620865854343 0.0 31 5.615138413161884E-4 0.0 0.0 49.496883598180695 0.0 32 5.615138413161884E-4 0.0 0.0 49.672075916671346 0.0 33 5.615138413161884E-4 0.0 0.0 49.87141333033859 0.0 34 5.615138413161884E-4 0.0 0.0 50.02751417822449 0.0 35 5.615138413161884E-4 0.0 0.0 50.226290078050425 0.0 36 5.615138413161884E-4 0.0 0.0 50.38969060587343 0.0 37 5.615138413161884E-4 0.0 0.0 50.55477567522039 0.0 38 5.615138413161884E-4 0.0 0.0 50.74232129822 0.0 39 5.615138413161884E-4 0.0 0.0 50.90740636756696 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGTTTA 25 3.8774913E-5 45.000004 9 TATCAGA 25 3.8774913E-5 45.000004 45 GTTTATT 25 3.8774913E-5 45.000004 11 AGTGCAG 25 3.8774913E-5 45.000004 1 CGTAGGG 25 3.8774913E-5 45.000004 3 ACAATCG 25 3.8774913E-5 45.000004 1 ACGTGGG 25 3.8774913E-5 45.000004 3 TATTAGG 25 3.8774913E-5 45.000004 2 CGGGATA 25 3.8774913E-5 45.000004 6 GCGATTA 25 3.8774913E-5 45.000004 23 GACGGGA 25 3.8774913E-5 45.000004 4 CACCCGT 25 3.8774913E-5 45.000004 15 AGCAACG 20 7.0172176E-4 45.0 1 GCAAGCG 20 7.0172176E-4 45.0 1 TCACATG 20 7.0172176E-4 45.0 17 CCAGGGT 20 7.0172176E-4 45.0 4 CGCATGG 20 7.0172176E-4 45.0 2 GTGATAG 20 7.0172176E-4 45.0 1 AGGGTGT 20 7.0172176E-4 45.0 6 AGGGTAT 20 7.0172176E-4 45.0 6 >>END_MODULE