SRR3548654_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548654_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	410857
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCT	4007	0.9752785032261834	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3974	0.9672465115599832	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCC	3948	0.9609182757017649	No Hit
CTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGCT	3895	0.9480184102984737	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGT	3549	0.8638041946467994	No Hit
AAACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCT	1169	0.28452721993296937	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	944	0.22976364039069558	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTT	902	0.21954110554280445	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCT	869	0.2115091138766043	No Hit
AACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTG	868	0.2112657201897497	No Hit
AATGCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTC	814	0.198122461099604	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTT	777	0.18911689468598564	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	773	0.18814331993856742	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	655	0.15942286488973048	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTAT	621	0.1511474795366758	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	516	0.125591142416948	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCGCAGTC	510	0.1241307802958207	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGGG	115	0.0	45.000004	3
AATCCCG	25	3.886415E-5	45.0	1
GTACCGG	20	7.0279907E-4	45.0	2
GTCGAAA	25	3.886415E-5	45.0	34
CTATACG	20	7.0279907E-4	45.0	1
GCAAACG	35	1.2093733E-7	45.0	1
CAACCAG	25	3.886415E-5	45.0	1
TGAACGG	25	3.886415E-5	45.0	2
GCCGGAA	35	1.2093733E-7	45.0	27
ATTAACG	20	7.0279907E-4	45.0	1
TACGGGT	20	7.0279907E-4	45.0	4
ATCACGG	80	0.0	45.0	2
AGCGGTA	25	3.886415E-5	45.0	40
CCCAACG	20	7.0279907E-4	45.0	1
CTACGGA	25	3.886415E-5	45.0	29
GCGGCTA	25	3.886415E-5	45.0	23
TTACGTA	20	7.0279907E-4	45.0	12
CGGCTAG	20	7.0279907E-4	45.0	1
TTACGAC	20	7.0279907E-4	45.0	32
CGAGAGT	35	1.2093733E-7	45.0	12