SRR3548643_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548643_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	235525
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGT	4264	1.810423521919117	No Hit
AATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT	4218	1.7908926865513215	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCC	4125	1.7514064324381702	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2001	0.8495913384990977	No Hit
CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT	1941	0.8241163358454517	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT	1052	0.4466617131939285	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT	1018	0.4322258783568623	No Hit
AACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTG	693	0.29423628064961255	No Hit
AATGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTC	606	0.2572975268018257	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTAT	489	0.2076212716272158	No Hit
AAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT	477	0.20252627109648658	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	434	0.18426918586137353	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	433	0.18384460248381276	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT	336	0.1426600148604182	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	296	0.1256766797579875	No Hit
AATCTGACTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT	257	0.1091179280331175	No Hit
AATCTGTCACTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT	244	0.10359834412482752	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.021853E-4	45.000004	1
ACACGAC	20	7.021853E-4	45.000004	26
ACTGCCG	30	2.158129E-6	45.000004	1
CTCGTGT	20	7.021853E-4	45.000004	30
CGTATGG	20	7.021853E-4	45.000004	2
CGACGTT	35	1.2064265E-7	45.000004	27
GGCCGGT	20	7.021853E-4	45.000004	9
ATTCGGG	20	7.021853E-4	45.000004	3
ATGCTAG	30	2.158129E-6	45.000004	1
ATTCGAC	20	7.021853E-4	45.000004	21
GTCTACT	20	7.021853E-4	45.000004	16
ACTTAGC	20	7.021853E-4	45.000004	36
TAGCATA	20	7.021853E-4	45.000004	30
CCCGTGA	20	7.021853E-4	45.000004	25
GTTAATC	20	7.021853E-4	45.000004	40
TACGAAG	20	7.021853E-4	45.000004	1
ACCAGAC	20	7.021853E-4	45.000004	42
GACGGTT	20	7.021853E-4	45.000004	25
GACGGCT	20	7.021853E-4	45.000004	23
CGTAATG	20	7.021853E-4	45.000004	1