##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548643_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 235525 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.974134380638997 31.0 31.0 33.0 28.0 34.0 2 31.17107738032056 31.0 31.0 34.0 28.0 34.0 3 31.340757881328948 31.0 31.0 34.0 28.0 34.0 4 35.3025241481796 37.0 35.0 37.0 33.0 37.0 5 34.921341683473095 35.0 35.0 37.0 32.0 37.0 6 34.93883027279482 35.0 35.0 37.0 32.0 37.0 7 32.47307929094576 35.0 35.0 37.0 25.0 37.0 8 33.8957010933022 35.0 35.0 37.0 27.0 37.0 9 34.22569578600998 37.0 34.0 39.0 28.0 39.0 10 34.83405583271415 37.0 34.0 39.0 27.0 39.0 11 35.77089056363443 37.0 35.0 39.0 30.0 39.0 12 35.649846088525635 37.0 35.0 39.0 30.0 39.0 13 35.66698651947776 37.0 35.0 39.0 30.0 39.0 14 36.65061458443902 38.0 35.0 40.0 31.0 41.0 15 36.841948837703 38.0 35.0 40.0 31.0 41.0 16 36.742923256554505 38.0 35.0 40.0 31.0 41.0 17 36.70043095212822 38.0 35.0 40.0 31.0 41.0 18 36.47406007854792 38.0 35.0 40.0 31.0 41.0 19 36.435902770406535 38.0 35.0 40.0 30.0 41.0 20 36.489446980150724 38.0 35.0 40.0 31.0 41.0 21 36.645273325549304 38.0 35.0 40.0 31.0 41.0 22 36.58623076106571 38.0 35.0 40.0 31.0 41.0 23 36.57742914764887 38.0 35.0 40.0 31.0 41.0 24 36.280866150090226 38.0 35.0 40.0 30.0 41.0 25 36.31436153274599 38.0 35.0 40.0 30.0 41.0 26 36.251378834518626 38.0 35.0 40.0 30.0 41.0 27 36.151007324063265 38.0 35.0 40.0 30.0 41.0 28 36.074696953614264 38.0 35.0 40.0 30.0 41.0 29 35.83556310370449 38.0 34.0 40.0 29.0 41.0 30 35.83811060396985 38.0 34.0 40.0 29.0 41.0 31 35.718140324806285 38.0 34.0 40.0 29.0 41.0 32 35.67938859993631 38.0 34.0 40.0 29.0 41.0 33 35.613183313873265 38.0 34.0 40.0 29.0 41.0 34 35.658146693556944 38.0 34.0 40.0 29.0 41.0 35 35.48469164632205 38.0 34.0 40.0 28.0 41.0 36 35.4504787177582 38.0 34.0 40.0 28.0 41.0 37 35.336533276722214 38.0 34.0 40.0 27.0 41.0 38 35.16325655450589 38.0 34.0 40.0 27.0 41.0 39 35.19234900753636 38.0 34.0 40.0 27.0 41.0 40 34.846339029826986 37.0 34.0 40.0 25.0 41.0 41 34.96203800021229 38.0 34.0 40.0 26.0 41.0 42 34.89325124721367 37.0 34.0 40.0 26.0 41.0 43 34.8884067508757 37.0 34.0 40.0 26.0 41.0 44 34.77667338923681 37.0 34.0 40.0 25.0 41.0 45 34.525090754696954 37.0 33.0 40.0 24.0 41.0 46 34.47838658316527 37.0 33.0 40.0 24.0 41.0 47 34.34494427343169 37.0 33.0 40.0 24.0 41.0 48 34.294295722322474 37.0 33.0 40.0 24.0 41.0 49 34.14053285213884 37.0 33.0 40.0 23.0 41.0 50 33.916815624668295 36.0 33.0 40.0 23.0 41.0 51 31.72480628383399 35.0 30.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 5.0 11 15.0 12 12.0 13 14.0 14 17.0 15 13.0 16 39.0 17 93.0 18 190.0 19 341.0 20 602.0 21 893.0 22 1320.0 23 1758.0 24 2046.0 25 2321.0 26 2704.0 27 3218.0 28 4066.0 29 5144.0 30 6635.0 31 8571.0 32 11435.0 33 15175.0 34 22788.0 35 24841.0 36 26605.0 37 35343.0 38 38070.0 39 21247.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.3809574355164 39.34359409829105 18.97208364292538 22.30336482326717 2 21.498779322789513 37.58157308141386 19.007748646640486 21.911898949156143 3 19.64165162933871 30.463432756607578 26.88546863390298 23.009446980150727 4 24.73028340940452 30.463432756607578 18.44814775501539 26.35813607897251 5 16.257297526801825 38.19891731238722 18.472773590913917 27.071011569897042 6 19.912111240844922 35.582634539857764 24.915401762021016 19.589852457276297 7 67.29264409298375 18.837490712238615 8.21526377242331 5.654601422354315 8 73.84651310901178 7.805965396454728 6.398046916463221 11.949474578070268 9 67.18310158157308 14.768708205073771 11.176732830909671 6.871457382443477 10 37.672433924211866 29.688568092559176 15.401337437639317 17.23766054558964 11 29.980681456320983 26.418426918586135 25.101793864770194 18.499097760322684 12 29.02367052329901 23.828043732087888 30.963591975374165 16.184693769238933 13 25.249973463538904 30.508438594629023 23.34401868166861 20.897569260163465 14 15.997027916357073 33.83844602483813 31.815306230761063 18.34921982804373 15 16.340940452181297 31.477762445600256 30.09022396773166 22.091073134486784 16 17.190107207302834 27.53975161872413 33.29922513533595 21.970916038637085 17 16.225878356862328 28.279800445812548 27.615327459929944 27.87899373739518 18 19.419594522874426 29.40239889608322 26.56405901708948 24.61394756395287 19 21.443583483706615 32.03948625411315 27.923574992039065 18.593355270141174 20 23.394119520220784 31.325761596433498 25.192654707568195 20.08746417577752 21 21.162084704383822 29.04659802568729 25.567561829954354 24.223755439974525 22 19.21112408449209 31.173760747266744 26.390404415667128 23.224710752574037 23 22.109754803099456 29.01687718925804 22.09998938541556 26.77337862222694 24 17.859675193716164 34.08725188408874 26.085128967200934 21.967943954994162 25 19.16951491349114 26.82560237766691 27.70194246895234 26.30294023988961 26 22.144995223437004 32.04076000424583 22.212503980469165 23.601740791848 27 16.604606729646534 30.04182146268974 28.68527757138308 24.668294236280648 28 21.372253476276406 26.952128224180022 30.600997770937266 21.074620528606307 29 18.45961150620953 28.96168135017514 27.976223330856598 24.60248381275873 30 21.08183844602484 27.81912748115911 28.788875915507905 22.31015815730814 31 26.544528181721688 29.427024731981742 20.882708841948837 23.145738244347733 32 21.087782613310686 26.200615645897464 24.37575628914128 28.335845451650567 33 24.614796730707994 28.213990022290623 26.099564802038 21.07164844496338 34 18.817535293493258 25.595584332873365 23.89003290521176 31.696847468421613 35 19.118989491561404 25.736546014223542 32.07217917418533 23.07228532002972 36 24.583377560768497 24.405477125570535 27.852669567986414 23.158475745674558 37 19.049782401019 27.9881116654283 26.12758730495701 26.83451862859569 38 23.96221207939709 28.542192973145102 26.013374376393166 21.48222057106464 39 20.26451544422036 25.748434348795247 26.013374376393166 27.973675830591233 40 21.73951809786647 29.26568304850865 25.51363974100414 23.48115911262074 41 19.157626578919434 22.244772317163783 31.860736652160064 26.736864451756716 42 23.709160386370872 24.01698333510243 26.621377773060185 25.652478505466508 43 21.868166861267383 24.477656299755864 27.027279482008282 26.626897356968477 44 20.593567561829953 23.869652903088845 27.372890351342743 28.163889183738455 45 25.1514701199448 27.968580830060503 24.944273431695148 21.935675618299545 46 19.1915932491243 25.33191805540813 33.19987262498673 22.27661607048084 47 21.715316845345505 27.046810317376075 24.54941089056363 26.688461946714785 48 20.61946714786116 22.56320985033436 33.52807557584121 23.289247425963275 49 20.930262180235644 21.88260269610445 31.37586243498567 25.811272688674237 50 20.54686339029827 24.12610126313555 26.489756926016344 28.837278420549833 51 18.36450482963592 24.568092559176307 32.71797049145526 24.349432119732512 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2305.0 1 1820.0 2 1335.0 3 902.5 4 470.0 5 445.5 6 421.0 7 446.0 8 471.0 9 510.5 10 550.0 11 579.0 12 608.0 13 624.5 14 641.0 15 631.0 16 621.0 17 653.0 18 685.0 19 692.5 20 700.0 21 726.0 22 752.0 23 876.5 24 1001.0 25 1158.5 26 1555.0 27 1794.0 28 2107.5 29 2421.0 30 2643.0 31 2865.0 32 3372.0 33 3879.0 34 4511.5 35 5144.0 36 5684.0 37 6224.0 38 6999.5 39 7775.0 40 9202.5 41 10630.0 42 12847.0 43 15064.0 44 22984.5 45 30905.0 46 29668.0 47 28431.0 48 25961.0 49 23491.0 50 20702.0 51 17913.0 52 16187.0 53 14461.0 54 12580.0 55 10699.0 56 9793.0 57 8887.0 58 8371.0 59 7855.0 60 7273.0 61 6691.0 62 5997.0 63 5303.0 64 4587.0 65 3871.0 66 3324.0 67 2777.0 68 2405.0 69 2033.0 70 1905.5 71 1778.0 72 1463.0 73 1148.0 74 863.5 75 514.0 76 449.0 77 369.0 78 289.0 79 201.0 80 113.0 81 92.0 82 71.0 83 55.5 84 40.0 85 34.0 86 28.0 87 21.5 88 15.0 89 11.0 90 7.0 91 6.5 92 6.0 93 6.0 94 6.0 95 4.0 96 2.0 97 2.5 98 3.0 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 235525.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.84470862965715 #Duplication Level Percentage of deduplicated Percentage of total 1 78.19856704196519 27.24806283833988 2 8.776867963152506 6.116548137140431 3 3.2607106302090947 3.4085553550578496 4 1.7509869864015208 2.4405052542192975 5 1.032070965540771 1.7981106039698547 6 0.693327484525028 1.4495276509924637 7 0.5483257786226057 1.337437639316421 8 0.3935760588780036 1.0971234476170257 9 0.34118048447628796 1.0699501114531365 >10 4.679046644246235 36.84322258783569 >50 0.2717258858507579 5.8511835261649505 >100 0.042647560559535995 2.882921133637618 >500 0.002437003460544914 0.5515338074514382 >1k 0.0085295121119072 7.905317906803949 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGT 4264 1.810423521919117 No Hit AATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 4218 1.7908926865513215 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCC 4125 1.7514064324381702 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2001 0.8495913384990977 No Hit CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT 1941 0.8241163358454517 No Hit AATGACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT 1052 0.4466617131939285 No Hit AATGATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT 1018 0.4322258783568623 No Hit AACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTG 693 0.29423628064961255 No Hit AATGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTC 606 0.2572975268018257 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTAT 489 0.2076212716272158 No Hit AAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 477 0.20252627109648658 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 434 0.18426918586137353 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 433 0.18384460248381276 No Hit AAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT 336 0.1426600148604182 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 296 0.1256766797579875 No Hit AATCTGACTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 257 0.1091179280331175 No Hit AATCTGTCACTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 244 0.10359834412482752 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0584863602589958 0.0 2 0.0 0.0 0.0 1.2992251353359516 0.0 3 0.0 0.0 0.0 1.9263347839932066 0.0 4 0.0 0.0 0.0 5.23214096168135 0.0 5 0.0 0.0 0.0 5.775183101581573 0.0 6 0.0 0.0 0.0 7.338923681137883 0.0 7 0.0 0.0 0.0 8.66319923574992 0.0 8 0.0 0.0 0.0 9.212185542935995 0.0 9 0.0 0.0 0.0 12.064112090011676 0.0 10 0.0 0.0 0.0 13.312811803417896 0.0 11 0.0 0.0 0.0 16.534550472349007 0.0 12 0.0 0.0 0.0 17.3247001379896 0.0 13 0.0 0.0 0.0 17.805328521388386 0.0 14 0.0 0.0 0.0 18.346672327778368 0.0 15 0.0 0.0 0.0 18.665959027704066 0.0 16 0.0 0.0 0.0 19.16739199660333 0.0 17 0.0 0.0 0.0 19.69599830166649 0.0 18 0.0 0.0 0.0 20.536248805859252 0.0 19 0.0 0.0 0.0 20.81859675193716 0.0 20 0.0 0.0 0.0 21.17185012206772 0.0 21 4.245833775607685E-4 0.0 0.0 21.515762657891944 0.0 22 4.245833775607685E-4 0.0 0.0 21.883027279482008 0.0 23 4.245833775607685E-4 0.0 0.0 22.241375650143297 0.0 24 4.245833775607685E-4 0.0 0.0 22.502069843965607 0.0 25 4.245833775607685E-4 0.0 0.0 22.749177369705976 0.0 26 4.245833775607685E-4 0.0 0.0 22.954675724445387 0.0 27 4.245833775607685E-4 0.0 0.0 23.21919116866575 0.0 28 4.245833775607685E-4 0.0 0.0 23.457807026854898 0.0 29 4.245833775607685E-4 0.0 0.0 23.696847468421613 0.0 30 4.245833775607685E-4 0.0 0.0 24.06114000636875 0.0 31 4.245833775607685E-4 0.0 0.0 24.31461628277253 0.0 32 4.245833775607685E-4 0.0 0.0 24.579131726992888 0.0 33 4.245833775607685E-4 0.0 0.0 24.825814669355694 0.0 34 4.245833775607685E-4 0.0 0.0 25.051693026218025 0.0 35 4.245833775607685E-4 0.0 0.0 25.324275554612036 0.0 36 4.245833775607685E-4 0.0 0.0 25.573081413862646 0.0 37 4.245833775607685E-4 0.0 0.0 25.79428935357181 0.0 38 4.245833775607685E-4 0.0 0.0 26.04521812971022 0.0 39 4.245833775607685E-4 0.0 0.0 26.30930899055302 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGCG 20 7.021853E-4 45.000004 1 ACACGAC 20 7.021853E-4 45.000004 26 ACTGCCG 30 2.158129E-6 45.000004 1 CTCGTGT 20 7.021853E-4 45.000004 30 CGTATGG 20 7.021853E-4 45.000004 2 CGACGTT 35 1.2064265E-7 45.000004 27 GGCCGGT 20 7.021853E-4 45.000004 9 ATTCGGG 20 7.021853E-4 45.000004 3 ATGCTAG 30 2.158129E-6 45.000004 1 ATTCGAC 20 7.021853E-4 45.000004 21 GTCTACT 20 7.021853E-4 45.000004 16 ACTTAGC 20 7.021853E-4 45.000004 36 TAGCATA 20 7.021853E-4 45.000004 30 CCCGTGA 20 7.021853E-4 45.000004 25 GTTAATC 20 7.021853E-4 45.000004 40 TACGAAG 20 7.021853E-4 45.000004 1 ACCAGAC 20 7.021853E-4 45.000004 42 GACGGTT 20 7.021853E-4 45.000004 25 GACGGCT 20 7.021853E-4 45.000004 23 CGTAATG 20 7.021853E-4 45.000004 1 >>END_MODULE