SRR3548642_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548642_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	192336
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCC	2068	1.075201730305299	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGT	2032	1.0564844854837367	No Hit
AATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT	2010	1.0450461692038933	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1641	0.8531944097828801	No Hit
CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT	1168	0.6072706097662424	Illumina Single End Adapter 1 (95% over 22bp)
AACCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTC	735	0.3821437484402296	No Hit
AATGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTT	480	0.24956326428749687	No Hit
AACCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGC	429	0.22304716745695036	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT	417	0.2168080858497629	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	408	0.21212877464437235	No Hit
AAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT	369	0.19185175942101323	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	335	0.1741743615339822	No Hit
AACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTG	332	0.17261459113218533	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTT	276	0.1434988769653107	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTAT	247	0.12842109641460778	No Hit
AATGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC	237	0.12322186174195159	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	215	0.11178354546210797	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	200	0.1039846934531237	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCCGGT	55	1.8189894E-12	45.000004	9
TAGAGGT	20	7.018626E-4	45.0	29
CGGAAAT	20	7.018626E-4	45.0	14
CCGGGAC	20	7.018626E-4	45.0	5
ATTAGAC	20	7.018626E-4	45.0	30
CGCGGCT	20	7.018626E-4	45.0	36
CTATCCG	20	7.018626E-4	45.0	1
TATGGGA	25	3.8786588E-5	45.0	4
TTAGACG	20	7.018626E-4	45.0	31
TTATGGG	35	1.2048804E-7	45.0	3
TGGAAGT	20	7.018626E-4	45.0	15
ATTACGG	20	7.018626E-4	45.0	2
GACCGAT	25	3.8786588E-5	45.0	9
CGACAAT	20	7.018626E-4	45.0	20
CTAACGG	35	1.2048804E-7	45.0	2
CTAACCG	20	7.018626E-4	45.0	1
TCGGAAA	20	7.018626E-4	45.0	13
CGTAGGG	70	0.0	45.0	3
CGGGCAA	35	1.2048804E-7	45.0	6
ACTACGG	40	6.7648216E-9	45.0	2