##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548642_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 192336 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.979842567174114 31.0 31.0 33.0 28.0 34.0 2 31.148198985109392 31.0 31.0 34.0 28.0 34.0 3 31.372301597204892 31.0 31.0 34.0 28.0 34.0 4 35.34696572664504 37.0 35.0 37.0 33.0 37.0 5 34.94334913900674 35.0 35.0 37.0 32.0 37.0 6 34.940843107894516 35.0 35.0 37.0 32.0 37.0 7 33.756883786706595 35.0 35.0 37.0 30.0 37.0 8 34.55273063805008 37.0 35.0 37.0 31.0 37.0 9 35.88607956908743 38.0 35.0 39.0 32.0 39.0 10 35.67089884369021 37.0 35.0 39.0 30.0 39.0 11 36.07816009483404 37.0 35.0 39.0 31.0 39.0 12 35.716667706513604 37.0 35.0 39.0 31.0 39.0 13 35.52149883537143 37.0 35.0 39.0 30.0 39.0 14 36.48939356126778 38.0 35.0 40.0 31.0 41.0 15 36.6339166874636 38.0 35.0 40.0 31.0 41.0 16 36.57359516679145 38.0 35.0 40.0 31.0 41.0 17 36.46025705016222 38.0 35.0 40.0 31.0 41.0 18 36.252958364528745 38.0 35.0 40.0 30.0 41.0 19 36.22805922968139 38.0 34.0 40.0 30.0 41.0 20 36.261448714749186 38.0 34.0 40.0 30.0 41.0 21 36.35250291157141 38.0 35.0 40.0 31.0 41.0 22 36.336073330005824 38.0 35.0 40.0 30.0 41.0 23 36.31433013060477 38.0 35.0 40.0 31.0 41.0 24 36.071437484402296 38.0 34.0 40.0 30.0 41.0 25 36.06134576990267 38.0 34.0 40.0 30.0 41.0 26 35.93117253140338 38.0 34.0 40.0 30.0 41.0 27 35.816160261209546 38.0 34.0 40.0 30.0 41.0 28 35.6592265618501 38.0 34.0 40.0 29.0 41.0 29 35.44771649613177 38.0 34.0 40.0 29.0 41.0 30 35.491530446718244 38.0 34.0 40.0 29.0 41.0 31 35.276022169536645 37.0 34.0 40.0 27.0 41.0 32 35.228553156975295 37.0 34.0 40.0 27.0 41.0 33 35.1757861242825 37.0 34.0 40.0 27.0 41.0 34 35.030410323600364 37.0 34.0 40.0 26.0 41.0 35 35.10313721820148 38.0 34.0 40.0 27.0 41.0 36 34.86517864570335 37.0 33.0 40.0 26.0 41.0 37 34.8915803593711 37.0 34.0 40.0 26.0 41.0 38 34.74755116046918 37.0 33.0 40.0 26.0 41.0 39 34.60948548373679 37.0 33.0 40.0 25.0 41.0 40 34.48065364778304 37.0 33.0 40.0 24.0 41.0 41 34.41358871974045 37.0 33.0 40.0 24.0 41.0 42 34.34675775725813 37.0 33.0 40.0 24.0 41.0 43 34.226982988104155 37.0 33.0 40.0 23.0 41.0 44 34.18703206887946 37.0 33.0 40.0 23.0 41.0 45 33.89034814075368 36.0 33.0 40.0 23.0 41.0 46 33.70861929124033 36.0 32.0 39.0 23.0 41.0 47 33.60053240163048 36.0 32.0 39.0 23.0 40.0 48 33.51080920888445 35.0 32.0 39.0 22.0 40.0 49 33.391164420597285 35.0 32.0 39.0 22.0 40.0 50 33.26288890275352 35.0 32.0 39.0 21.0 40.0 51 30.989617128358706 34.0 28.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 8.0 11 6.0 12 4.0 13 12.0 14 12.0 15 29.0 16 45.0 17 75.0 18 156.0 19 333.0 20 526.0 21 857.0 22 1187.0 23 1591.0 24 1887.0 25 2201.0 26 2561.0 27 3087.0 28 3769.0 29 4547.0 30 5788.0 31 7581.0 32 9709.0 33 13087.0 34 20414.0 35 19905.0 36 19925.0 37 25792.0 38 30576.0 39 16663.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.75397221528991 39.43099575742451 17.94411862573829 22.87091340154729 2 22.43001830130605 37.65129772897429 18.882060560685467 21.036623409034192 3 20.916001164628568 30.48675235005407 22.91874636053573 25.678500124781635 4 23.321687047666583 30.279822810082358 18.582064720073205 27.816425422177854 5 16.807046002828383 36.83813742617087 18.3538183179436 28.00099825305715 6 19.940624740038267 36.82877880376009 22.607312203643623 20.623284252558026 7 74.03554196822228 13.436902088012644 7.242533899010066 5.285022044755012 8 78.0363530488312 7.287767240662174 5.7373554612761 8.938524249230513 9 72.9010689626487 11.352008984277514 9.791718659013393 5.955203394060395 10 39.29165626819732 31.47304716745695 13.61419599035022 15.621100573995509 11 34.22448215622661 27.222152899093256 22.527243989684717 16.026120954995424 12 30.95000415938774 23.541094750852675 29.571167124199317 15.93773396556027 13 25.831877547624988 30.979119873554612 21.925692538058396 21.263310040761997 14 17.08520505781549 34.250998253057155 30.43112053905665 18.23267615007071 15 18.515514516263206 29.419349471757755 30.890212960652192 21.174923051326843 16 20.291053156975295 28.781403377422844 30.329215539472585 20.598327926129272 17 17.867689876050246 28.960776973629482 27.353173612844188 25.81835953747608 18 24.07037684052907 28.347787205723318 24.05217951917478 23.529656434572832 19 22.648386157557606 33.29745861409201 25.50692538058398 18.54722984776641 20 26.980908410282005 30.410323600366024 22.90938773812495 19.69938025122702 21 21.366254887280594 31.65346061059812 24.5372681141336 22.443016387987686 22 20.78758006821396 29.702707761417518 26.729265452125446 22.780446718243073 23 23.627402046418766 28.769445137675735 22.491889193910655 25.111263621994844 24 20.774581981532318 30.70823974710922 25.921824307461943 22.595353963896514 25 20.028491806006155 28.28123700191332 25.37746443723484 26.312806754845685 26 20.93835787372099 32.314283337492725 23.28997171616338 23.45738707262291 27 17.964915564428914 30.470114799101573 26.373117877048497 25.191851759421013 28 22.600033275101904 31.114299975043675 26.534294151900838 19.75137259795358 29 21.51235338158223 33.11288578321271 25.80588137426171 19.56887946094335 30 22.821520672157057 27.31729889360286 27.646930371849265 22.214250062390818 31 27.4452000665502 33.42639963397388 20.375800682139587 18.752599617336326 32 24.704163547125862 27.45143914815739 25.43673571250312 22.407661592213625 33 25.228766325596872 28.90878462690292 23.05132684468846 22.811122202811745 34 21.838345395557774 29.01900840196323 25.89478828716413 23.247857915314864 35 20.922240246235756 28.997171616338075 26.134992929040845 23.945595208385324 36 23.77402046418767 31.88014724232593 24.970884285833126 19.374948007653273 37 22.430538224773315 29.314844854837368 24.766034439730472 23.48858248065885 38 21.94804924715082 31.906143415689208 24.26794775809001 21.877859579069963 39 23.85616837201564 25.503285916313118 26.954912236918727 23.685633474752514 40 24.487875384743365 26.463064636885452 22.437297229847765 26.611762748523415 41 21.15412611263622 25.043673571250313 28.544318276349724 25.257882039763746 42 25.33587055985359 24.857021046501952 23.367960236253225 26.439148157391234 43 21.499875218367855 26.398594126944513 25.011438316279843 27.090092338407786 44 21.722922385824806 24.850781964894768 25.640025788203975 27.786269861076452 45 25.738811246984444 29.133911488228932 22.928624906413773 22.198652358372847 46 20.958634888944346 26.36479910157225 30.030259545794856 22.646306463688546 47 21.71772315115215 27.975522003161135 23.97003161134681 26.336723234339903 48 22.994135263289245 22.883391564761666 32.29036685799851 21.832106313950586 49 22.713896514433078 22.119104067881207 28.90878462690292 26.258214790782798 50 20.336286498627402 25.45181349305382 26.818692288495132 27.393207719823643 51 19.105107728142418 24.012145412195324 31.43665252474836 25.446094334913898 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1934.0 1 1531.0 2 1128.0 3 755.0 4 382.0 5 355.5 6 329.0 7 333.0 8 337.0 9 367.0 10 397.0 11 435.5 12 474.0 13 475.0 14 476.0 15 481.5 16 487.0 17 527.5 18 568.0 19 573.5 20 579.0 21 600.5 22 622.0 23 650.5 24 679.0 25 693.5 26 1082.0 27 1456.0 28 1613.5 29 1771.0 30 2342.5 31 2914.0 32 3137.0 33 3360.0 34 3918.0 35 4476.0 36 4717.0 37 4958.0 38 5385.0 39 5812.0 40 6268.0 41 6724.0 42 8992.0 43 11260.0 44 15824.5 45 20389.0 46 20561.0 47 20733.0 48 19459.5 49 18186.0 50 17025.5 51 15865.0 52 14723.5 53 13582.0 54 12189.0 55 10796.0 56 9730.0 57 8664.0 58 8323.5 59 7983.0 60 7289.0 61 6595.0 62 6016.5 63 5438.0 64 4588.5 65 3739.0 66 3120.5 67 2502.0 68 2212.0 69 1922.0 70 1753.0 71 1584.0 72 1307.0 73 1030.0 74 838.0 75 482.0 76 318.0 77 277.0 78 236.0 79 179.5 80 123.0 81 88.5 82 54.0 83 47.0 84 40.0 85 31.0 86 22.0 87 34.5 88 47.0 89 26.5 90 6.0 91 5.0 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 192336.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.250436735712505 #Duplication Level Percentage of deduplicated Percentage of total 1 79.63738380370154 29.665273271774396 2 7.442146107249532 5.544463854920555 3 2.569578203947185 2.8715373097080112 4 1.3831895709460402 2.060976624240912 5 0.9198001284091227 1.713147824640213 6 0.8276805404349161 1.8498876965310707 7 0.6029645758311699 1.5722485650112301 8 0.576445300505262 1.7178271358456034 9 0.47595120453340034 1.5956451210381832 >10 5.383412891159311 40.37933616171699 >50 0.14236663596013735 3.2801971549787874 >100 0.030706529324735502 2.730118126611763 >500 0.001395751332942523 0.3821437484402296 >1k 0.006978756664712616 4.637197404542051 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCC 2068 1.075201730305299 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGT 2032 1.0564844854837367 No Hit AATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT 2010 1.0450461692038933 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1641 0.8531944097828801 No Hit CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT 1168 0.6072706097662424 Illumina Single End Adapter 1 (95% over 22bp) AACCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTC 735 0.3821437484402296 No Hit AATGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTT 480 0.24956326428749687 No Hit AACCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGC 429 0.22304716745695036 No Hit AATGATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT 417 0.2168080858497629 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 408 0.21212877464437235 No Hit AAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT 369 0.19185175942101323 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 335 0.1741743615339822 No Hit AACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTG 332 0.17261459113218533 No Hit AAAAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTT 276 0.1434988769653107 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTAT 247 0.12842109641460778 No Hit AATGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC 237 0.12322186174195159 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 215 0.11178354546210797 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 200 0.1039846934531237 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8391564761667083 0.0 2 0.0 0.0 0.0 1.0486856334747525 0.0 3 0.0 0.0 0.0 1.5322144580317778 0.0 4 0.0 0.0 0.0 4.186943681890026 0.0 5 0.0 0.0 0.0 4.589364445553614 0.0 6 0.0 0.0 0.0 6.167852092172033 0.0 7 0.0 0.0 0.0 7.2992055569420184 0.0 8 0.0 0.0 0.0 7.805091090591465 0.0 9 0.0 0.0 0.0 9.92637883703519 0.0 10 0.0 0.0 0.0 11.181994010481658 0.0 11 0.0 0.0 0.0 13.701543132850844 0.0 12 0.0 0.0 0.0 14.525101904999584 0.0 13 0.0 0.0 0.0 14.898406954496298 0.0 14 0.0 0.0 0.0 15.407931952416604 0.0 15 0.0 0.0 0.0 15.69908909408535 0.0 16 0.0 0.0 0.0 16.336515264953 0.0 17 0.0 0.0 0.0 16.846040262873306 0.0 18 0.0 0.0 0.0 18.070460028283836 0.0 19 0.0 0.0 0.0 18.374615256634222 0.0 20 0.0 0.0 0.0 19.009441810165544 0.0 21 0.0 0.0 0.0 19.39314532900757 0.0 22 0.0 0.0 0.0 19.784127776391315 0.0 23 0.0 0.0 0.0 20.18706846352217 0.0 24 0.0 0.0 0.0 20.471466600116464 0.0 25 0.0 0.0 0.0 20.732468180683803 0.0 26 0.0 0.0 0.0 20.968513434822395 0.0 27 0.0 0.0 0.0 21.260190499958405 0.0 28 0.0 0.0 0.0 21.51807253972215 0.0 29 0.0 0.0 0.0 21.759836952000665 0.0 30 0.0 0.0 0.0 22.157058480991598 0.0 31 0.0 0.0 0.0 22.40974128608269 0.0 32 0.0 0.0 0.0 22.725854754180183 0.0 33 0.0 0.0 0.0 23.00401380916729 0.0 34 0.0 0.0 0.0 23.244218451044006 0.0 35 0.0 0.0 0.0 23.50937941934947 0.0 36 0.0 0.0 0.0 23.75062390816072 0.0 37 0.0 0.0 0.0 23.999147325513686 0.0 38 0.0 0.0 0.0 24.309021712003993 0.0 39 0.0 0.0 0.0 24.603298394476333 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCCGGT 55 1.8189894E-12 45.000004 9 TAGAGGT 20 7.018626E-4 45.0 29 CGGAAAT 20 7.018626E-4 45.0 14 CCGGGAC 20 7.018626E-4 45.0 5 ATTAGAC 20 7.018626E-4 45.0 30 CGCGGCT 20 7.018626E-4 45.0 36 CTATCCG 20 7.018626E-4 45.0 1 TATGGGA 25 3.8786588E-5 45.0 4 TTAGACG 20 7.018626E-4 45.0 31 TTATGGG 35 1.2048804E-7 45.0 3 TGGAAGT 20 7.018626E-4 45.0 15 ATTACGG 20 7.018626E-4 45.0 2 GACCGAT 25 3.8786588E-5 45.0 9 CGACAAT 20 7.018626E-4 45.0 20 CTAACGG 35 1.2048804E-7 45.0 2 CTAACCG 20 7.018626E-4 45.0 1 TCGGAAA 20 7.018626E-4 45.0 13 CGTAGGG 70 0.0 45.0 3 CGGGCAA 35 1.2048804E-7 45.0 6 ACTACGG 40 6.7648216E-9 45.0 2 >>END_MODULE