SRR3548634_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548634_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	251303
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	1565	0.6227542050831069	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1450	0.5769927139747636	No Hit
AATCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCT	775	0.3083926574692702	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCC	764	0.30401547136325474	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGT	626	0.24910168203324273	No Hit
AAACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCT	345	0.13728447332502994	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	328	0.13051973116118787	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	316	0.1257446190455347	No Hit
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	266	0.10584831856364628	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	257	0.10226698447690637	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATGGG	90	0.0	45.000004	3
ACGTGGG	45	3.8198777E-10	45.000004	3
TTAACGG	65	0.0	45.000004	2
GTTTGGC	20	7.0227584E-4	45.0	26
ACCGGGT	20	7.0227584E-4	45.0	4
TAGACGG	40	6.7793735E-9	45.0	2
TAGCGTT	20	7.0227584E-4	45.0	15
CGTTGAA	20	7.0227584E-4	45.0	18
AGCCACG	25	3.8820803E-5	45.0	1
ATTAACG	25	3.8820803E-5	45.0	1
CGCTGCG	20	7.0227584E-4	45.0	1
GCGTTGA	20	7.0227584E-4	45.0	17
GCGCAAA	20	7.0227584E-4	45.0	39
AGAACGG	20	7.0227584E-4	45.0	2
ACGATGT	20	7.0227584E-4	45.0	27
TACGCAG	20	7.0227584E-4	45.0	1
GTTCGGC	25	3.8820803E-5	45.0	31
TCAGCCG	20	7.0227584E-4	45.0	29
ATCCACC	35	1.2068631E-7	45.0	25
CGCAGTT	20	7.0227584E-4	45.0	3