SRR3548628_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548628_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	227718
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGT	4882	2.1438797108704626	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCT	4762	2.0911829543558262	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCC	4622	2.02970340508875	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT	2332	1.0240736349344364	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2250	0.9880641846494348	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTT	1245	0.5467288488393539	No Hit
AACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG	911	0.4000562098736156	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCT	893	0.39215169639642017	No Hit
AATGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTC	606	0.26611862039891443	No Hit
AAACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCT	578	0.25382271054549926	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTAT	569	0.2498704538069015	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	471	0.20683476931994835	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	455	0.19980853511799682	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTT	392	0.17214273794781265	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	258	0.11329802650646853	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGG	30	2.1578107E-6	45.000004	2
GACACTA	30	2.1578107E-6	45.000004	25
GGGACGA	30	2.1578107E-6	45.000004	7
AATCTAT	30	2.1578107E-6	45.000004	36
ACGTAAG	30	2.1578107E-6	45.000004	1
TGGGCGA	30	2.1578107E-6	45.000004	6
GGATTCC	30	2.1578107E-6	45.000004	8
GGTTATT	30	2.1578107E-6	45.000004	9
ATACCGG	30	2.1578107E-6	45.000004	2
CTTGTAC	20	7.021362E-4	45.0	34
GTTTGCG	20	7.021362E-4	45.0	10
TTAGGTC	20	7.021362E-4	45.0	32
GATACGA	20	7.021362E-4	45.0	15
CGAAACG	25	3.8809252E-5	45.0	1
ACGTTGT	20	7.021362E-4	45.0	42
TTAGCGG	20	7.021362E-4	45.0	2
CGGCCTA	20	7.021362E-4	45.0	15
GACGTTG	25	3.8809252E-5	45.0	41
CGCATGG	20	7.021362E-4	45.0	2
ATCAGCG	25	3.8809252E-5	45.0	1