SRR3548626_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548626_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	276903
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCT	9365	3.382050754235238	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCC	7341	2.6511088720598908	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGT	6998	2.527238780367132	No Hit
CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT	2452	0.8855086438211215	TruSeq Adapter, Index 13 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2058	0.7432205501565531	No Hit
AATGACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTT	1937	0.6995229376352008	No Hit
AACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTG	1806	0.6522139521781996	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCT	1789	0.6460746181875964	No Hit
AATGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC	1502	0.5424282149344716	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACTAGCACTCGTAT	790	0.28529846191626673	No Hit
AAACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCT	465	0.16792884150767598	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	399	0.14409378013239293	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	389	0.14048240719674399	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTT	380	0.13723217155465994	No Hit
AATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCC	357	0.12892601380266736	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGC	313	0.11303597288581199	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGG	299	0.10798005077590347	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACTAG	30	2.1595133E-6	45.000004	1
TGCGGGT	35	1.2074634E-7	45.000004	4
CTAACAG	30	2.1595133E-6	45.000004	1
CATACGG	35	1.2074634E-7	45.000004	2
ACGCGAG	20	7.0240034E-4	45.0	1
AGCGTAT	20	7.0240034E-4	45.0	16
ACCGGGT	40	6.7830115E-9	45.0	4
GCGAAGA	25	3.8831124E-5	45.0	40
TAGCGTA	20	7.0240034E-4	45.0	15
TAGCGCG	20	7.0240034E-4	45.0	1
ATTACCG	20	7.0240034E-4	45.0	1
TCGGGTG	20	7.0240034E-4	45.0	5
CAATTGG	20	7.0240034E-4	45.0	2
TAAGTCG	20	7.0240034E-4	45.0	23
CGCGAAG	20	7.0240034E-4	45.0	1
GCGTTGG	25	3.8831124E-5	45.0	2
GTAGCGT	20	7.0240034E-4	45.0	14
CTAACCG	20	7.0240034E-4	45.0	1
CAAGGTC	20	7.0240034E-4	45.0	28
CGGGCTA	20	7.0240034E-4	45.0	6