SRR3548624_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548624_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	170189
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2700	1.5864715110847354	No Hit
CTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGCT	1512	0.8884240462074517	No Hit
AATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	1077	0.6328258583104666	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCC	1000	0.5875820411424945	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGT	905	0.5317617472339575	No Hit
AAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	668	0.39250480348318634	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	517	0.30377991527066966	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	490	0.2879152001598223	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTT	444	0.26088642626726755	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	316	0.18567592500102825	No Hit
AACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTG	273	0.160409897231901	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCT	266	0.15629682294390354	No Hit
AATGACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTT	247	0.14513276416219614	No Hit
AATGATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCT	214	0.12574255680449384	No Hit
CCACCAGGGAGTCATCTCCCTTTCACATGATACAGATGCAAATTGCAAATG	177	0.10400202128222154	No Hit
CCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGC	175	0.10282685719993653	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAG	20	7.0163346E-4	45.000004	23
GTTGACA	20	7.0163346E-4	45.000004	28
CCTTATC	20	7.0163346E-4	45.000004	26
CGAACAG	20	7.0163346E-4	45.000004	1
GCGACCG	20	7.0163346E-4	45.000004	32
GCGACAG	20	7.0163346E-4	45.000004	1
CAAAAGA	20	7.0163346E-4	45.000004	23
TGCCAGC	20	7.0163346E-4	45.000004	9
GTTTACA	20	7.0163346E-4	45.000004	28
ATTACTC	20	7.0163346E-4	45.000004	32
GGCCGAT	20	7.0163346E-4	45.000004	8
AAGGTTC	20	7.0163346E-4	45.000004	8
CACTGCG	20	7.0163346E-4	45.000004	1
CCAGACG	20	7.0163346E-4	45.000004	1
GAGACTA	20	7.0163346E-4	45.000004	1
GCATTCC	20	7.0163346E-4	45.000004	12
GATATTC	20	7.0163346E-4	45.000004	9
GTCCGAC	20	7.0163346E-4	45.000004	40
ATGGTCA	40	6.7557266E-9	45.000004	13
CGAGAGC	20	7.0163346E-4	45.000004	24