SRR3548620_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548620_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	212817
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCC	3288	1.544989357053243	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGT	3177	1.4928318696344747	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	2776	1.3044070727432489	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1841	0.8650624715130841	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	1807	0.8490863041956235	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT	737	0.34630692096965937	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT	575	0.2701851825747003	No Hit
AACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	543	0.2551487898053257	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	424	0.1992322041942138	No Hit
AAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	393	0.18466569869888214	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	390	0.18325603687675326	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	340	0.15976167317460543	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT	335	0.15741223680439062	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTAT	316	0.14848437859757443	No Hit
AATGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC	289	0.1357974221984146	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	249	0.11700193123669632	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCCGAT	30	2.1571414E-6	45.000004	8
CTAACGG	35	1.205699E-7	45.000004	2
CGGGCAC	65	0.0	45.000004	6
TTACGGG	35	1.205699E-7	45.000004	3
CGACTCG	35	1.205699E-7	45.000004	1
GATTAGG	30	2.1571414E-6	45.000004	2
TTTAGCG	25	3.8800626E-5	45.0	1
ACCGGGT	40	6.7702786E-9	45.0	4
CGAACAG	25	3.8800626E-5	45.0	1
TACCAGG	25	3.8800626E-5	45.0	2
TTTACGG	25	3.8800626E-5	45.0	2
TACCAAT	20	7.020321E-4	45.0	28
ACTTGCA	20	7.020321E-4	45.0	26
GGGTCGT	20	7.020321E-4	45.0	7
TTTCGCT	25	3.8800626E-5	45.0	28
AATGGTC	20	7.020321E-4	45.0	9
ATTCGCG	20	7.020321E-4	45.0	1
AATGGCC	20	7.020321E-4	45.0	11
AGGGTCG	20	7.020321E-4	45.0	6
GTAGGGT	45	3.8198777E-10	45.0	4