##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548620_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 212817 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.011963329997133 31.0 31.0 33.0 28.0 34.0 2 31.18266397891146 31.0 31.0 34.0 28.0 34.0 3 31.374147741956705 31.0 31.0 34.0 28.0 34.0 4 35.355563700268306 37.0 35.0 37.0 33.0 37.0 5 34.94959989098615 35.0 35.0 37.0 32.0 37.0 6 34.98538180690452 35.0 35.0 37.0 32.0 37.0 7 33.85409060366418 35.0 35.0 37.0 30.0 37.0 8 34.61460315670271 37.0 35.0 37.0 32.0 37.0 9 35.990550566919 39.0 35.0 39.0 32.0 39.0 10 35.64939361047285 37.0 35.0 39.0 30.0 39.0 11 36.076511744832416 37.0 35.0 39.0 31.0 39.0 12 35.96403012917201 37.0 35.0 39.0 31.0 39.0 13 36.02491342326976 37.0 35.0 39.0 31.0 39.0 14 37.05894265965595 39.0 36.0 40.0 32.0 41.0 15 37.08551948387582 39.0 36.0 40.0 32.0 41.0 16 36.96440603899124 38.0 35.0 40.0 31.0 41.0 17 36.87624578863531 38.0 35.0 40.0 31.0 41.0 18 36.60284657710615 38.0 35.0 40.0 31.0 41.0 19 36.596949491816915 38.0 35.0 40.0 31.0 41.0 20 36.68484190642665 38.0 35.0 40.0 31.0 41.0 21 36.818985325420435 38.0 35.0 40.0 31.0 41.0 22 36.77466085885996 39.0 35.0 40.0 31.0 41.0 23 36.71222223788513 38.0 35.0 40.0 31.0 41.0 24 36.404032572585834 38.0 35.0 40.0 30.0 41.0 25 36.46253823707693 38.0 35.0 40.0 30.0 41.0 26 36.42993745800383 38.0 35.0 40.0 30.0 41.0 27 36.33150077296457 38.0 35.0 40.0 30.0 41.0 28 36.222533914114 38.0 35.0 40.0 30.0 41.0 29 36.0074618099118 38.0 35.0 40.0 30.0 41.0 30 36.05360004135008 38.0 35.0 40.0 30.0 41.0 31 35.84073640733588 38.0 34.0 40.0 29.0 41.0 32 35.8153202046829 38.0 35.0 40.0 29.0 41.0 33 35.83649802412401 38.0 35.0 40.0 29.0 41.0 34 35.637256422184315 38.0 34.0 40.0 28.0 41.0 35 35.70574249237608 38.0 35.0 40.0 29.0 41.0 36 35.53912516387319 38.0 34.0 40.0 28.0 41.0 37 35.545233698435744 38.0 34.0 40.0 28.0 41.0 38 35.42562859170085 38.0 34.0 40.0 28.0 41.0 39 35.27010060286537 38.0 34.0 40.0 27.0 41.0 40 35.05850096561835 38.0 34.0 40.0 26.0 41.0 41 34.974024631490906 38.0 34.0 40.0 26.0 41.0 42 35.02598946512732 38.0 34.0 40.0 26.0 41.0 43 35.07420459831686 38.0 34.0 40.0 26.0 41.0 44 34.99720417071944 38.0 34.0 40.0 26.0 41.0 45 34.75708237593801 37.0 34.0 40.0 26.0 41.0 46 34.5920438686759 37.0 33.0 40.0 25.0 41.0 47 34.37376713326473 37.0 33.0 40.0 24.0 41.0 48 34.25960802003599 37.0 33.0 40.0 24.0 41.0 49 34.078706118402195 37.0 33.0 40.0 23.0 41.0 50 33.963113848987625 36.0 33.0 40.0 23.0 40.0 51 31.845045273638853 35.0 29.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 2.0 10 1.0 11 9.0 12 8.0 13 5.0 14 14.0 15 17.0 16 42.0 17 80.0 18 168.0 19 310.0 20 537.0 21 739.0 22 1075.0 23 1388.0 24 1667.0 25 1962.0 26 2337.0 27 2742.0 28 3270.0 29 4353.0 30 5579.0 31 7441.0 32 9768.0 33 12905.0 34 18254.0 35 20936.0 36 24568.0 37 32286.0 38 38745.0 39 21607.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.89063843583924 36.011690795378186 18.766827838001664 23.330842930780907 2 25.33867125276646 34.78951399559246 18.93645714393117 20.93535760770991 3 20.055728630701495 31.501712739113884 23.386289629117975 25.056269001066646 4 23.711921510029743 32.08860194439354 17.432347979719665 26.76712856585705 5 16.697914170390522 37.79726243674143 17.691255867717334 27.813567525150717 6 19.234835562948447 37.72302024744264 22.71529060178463 20.32685358782428 7 74.76188462387873 13.555777968865268 6.7367738479538755 4.945563559302124 8 78.40492065953379 6.328441806810546 5.47418674260045 9.792450791055225 9 73.98610073443382 10.000140966182212 9.604495881438043 6.409262417945935 10 33.43200966088236 32.93204960130065 14.66377216105856 18.972168576758435 11 26.511509888777685 28.46248185060404 25.138969161298203 19.887039099320074 12 25.687797497380377 25.150246455875237 31.954214184017253 17.207741862727133 13 25.234826165202968 28.880211637228232 25.806678977713247 20.078283219855557 14 18.721248772419496 30.215161382784274 32.072625777076084 18.990964067720153 15 17.710521245953096 31.905815794790833 27.12330311958161 23.260359839674464 16 19.413392727084773 29.065817110475194 29.557319199124134 21.9634709633159 17 18.939746354849472 28.341720821175 28.184778471644652 24.533754352330874 18 20.758210105395715 28.595459949158197 25.907704741632482 24.738625203813605 19 19.410573403440516 33.43999774454108 27.081953039465834 20.06747581255257 20 21.482776281969958 33.57673494128758 23.882490590507338 21.05799818623512 21 21.377521532584336 29.22980776911619 26.426930179449947 22.96574051884953 22 21.40430510720478 30.55160067099903 23.80683873938642 24.23725548240977 23 22.733616205472305 30.527636420022837 21.953603330561 24.78514404394386 24 18.639488386736023 34.482207718368365 24.333582373588573 22.544721521307036 25 21.39302781262775 27.265209076342583 25.00928027366235 26.332482837367316 26 24.14844678761565 29.06957620866754 22.1735105748131 24.608466428903704 27 18.18322784364031 26.817406504179647 28.159874446120376 26.83949120605967 28 21.754371126366784 29.349159136723102 26.170841615096542 22.725628121813575 29 22.23788513135699 31.2874441421503 23.804959190290248 22.669711536202463 30 24.953363688051237 25.92368090894994 24.400306366502676 24.722649036496144 31 25.19112664871697 31.390819342439748 21.11814375731262 22.299910251530658 32 22.97043939158996 25.531794922398117 23.763609110174468 27.734156575837453 33 25.114065135773927 26.01248960374406 25.08681167387944 23.786633586602573 34 21.04014246982149 29.611356235639068 24.173350813139926 25.175150481399513 35 22.21298110583271 24.99706320453723 28.703064134914037 24.086891554716022 36 25.35887640555031 29.599139166513954 24.269677704318735 20.772306723617003 37 19.989944412335483 30.200124990014892 21.40242555810861 28.407505039541014 38 24.1183740020769 30.20059487728894 23.924780445171205 21.756250675462958 39 22.28628352058341 26.936287984512514 23.96096176527251 26.81646672963156 40 25.138969161298203 26.6407288891395 25.16669251046674 23.05360943909556 41 20.732836192597397 25.496083489570854 30.211872171865966 23.559208145965783 42 24.04648124914833 26.452773979522316 25.81701649774219 23.683728273587164 43 22.419731506411612 24.344859668165608 27.276956258193657 25.958452567229124 44 22.193245840322906 23.167322159413956 25.700954341053585 28.938477659209553 45 26.792502478655372 25.079293477494748 25.970199749080198 22.158004294769682 46 21.473378536489097 24.259340184289787 30.865955257333766 23.40132602188735 47 23.212901224996124 27.84223064886734 24.4454155448108 24.49945258132574 48 20.812247141910657 25.15917431408205 30.806749460804355 23.221829083202937 49 23.515508629479786 23.557328596869613 28.657015182057826 24.270147591592778 50 21.752961464544658 24.274846464333205 26.75209217308768 27.220099898034462 51 20.934417833161824 21.460221692815892 31.63657038676422 25.968790087258064 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2117.0 1 1652.5 2 1188.0 3 813.5 4 439.0 5 400.5 6 362.0 7 368.0 8 374.0 9 410.0 10 446.0 11 477.0 12 508.0 13 534.5 14 561.0 15 542.5 16 524.0 17 549.0 18 574.0 19 570.5 20 567.0 21 585.0 22 603.0 23 778.5 24 954.0 25 868.0 26 1075.0 27 1368.0 28 1781.0 29 2194.0 30 2603.0 31 3012.0 32 3397.0 33 3782.0 34 4287.5 35 4793.0 36 5196.5 37 5600.0 38 5711.0 39 5822.0 40 6598.0 41 7374.0 42 8818.5 43 10263.0 44 15772.5 45 21282.0 46 21703.0 47 22124.0 48 21666.5 49 21209.0 50 19886.0 51 18563.0 52 17075.5 53 15588.0 54 14335.0 55 13082.0 56 11826.0 57 10570.0 58 9388.5 59 8207.0 60 7527.5 61 6848.0 62 6176.0 63 5504.0 64 4972.5 65 4441.0 66 3735.5 67 3030.0 68 2674.0 69 2318.0 70 2061.0 71 1804.0 72 1621.5 73 1439.0 74 1265.0 75 828.5 76 566.0 77 481.5 78 397.0 79 356.5 80 316.0 81 206.0 82 96.0 83 77.5 84 59.0 85 41.5 86 24.0 87 27.0 88 30.0 89 22.5 90 15.0 91 9.0 92 3.0 93 2.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 212817.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.797032191977145 #Duplication Level Percentage of deduplicated Percentage of total 1 78.69257568801144 27.382680894853323 2 8.234531558052232 5.730745194227905 3 2.783104221243957 2.9053130154076037 4 1.4691981526993814 2.044949416634949 5 0.8993437221487023 1.5647246225630473 6 0.7386501741972075 1.5421700334089852 7 0.5577011370081292 1.358444109258189 8 0.5198908904313069 1.4472528040523078 9 0.48343100980365683 1.5139767969664077 >10 5.321792205687741 39.466771921416054 >50 0.2457666027493451 5.288111382079439 >100 0.04321171037351122 2.8268418406424303 >500 0.0040510978475166775 0.8716408933496854 >1k 0.006751829745861129 6.0563770751396735 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCC 3288 1.544989357053243 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGT 3177 1.4928318696344747 No Hit AATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT 2776 1.3044070727432489 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1841 0.8650624715130841 No Hit CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT 1807 0.8490863041956235 No Hit AATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT 737 0.34630692096965937 No Hit AATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT 575 0.2701851825747003 No Hit AACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG 543 0.2551487898053257 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 424 0.1992322041942138 No Hit AAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT 393 0.18466569869888214 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 390 0.18325603687675326 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 340 0.15976167317460543 No Hit AAAAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT 335 0.15741223680439062 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTAT 316 0.14848437859757443 No Hit AATGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC 289 0.1357974221984146 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 249 0.11700193123669632 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0487883956638802 0.0 2 0.0 0.0 0.0 1.2743342872044996 0.0 3 0.0 0.0 0.0 1.817523975998158 0.0 4 0.0 0.0 0.0 4.527833772677934 0.0 5 0.0 0.0 0.0 4.913141337393159 0.0 6 0.0 0.0 0.0 6.488203479985152 0.0 7 0.0 0.0 0.0 7.617812486784421 0.0 8 0.0 0.0 0.0 8.31371553964204 0.0 9 0.0 0.0 0.0 10.864263663147211 0.0 10 0.0 0.0 0.0 12.304938045362917 0.0 11 0.0 0.0 0.0 15.253480689982473 0.0 12 0.0 0.0 0.0 15.989324161133744 0.0 13 0.0 0.0 0.0 16.383559584055785 0.0 14 0.0 0.0 0.0 16.833711592588937 0.0 15 0.0 0.0 0.0 17.10577632425981 0.0 16 0.0 0.0 0.0 17.633929620284093 0.0 17 0.0 0.0 0.0 18.23068645831865 0.0 18 0.0 0.0 0.0 19.16952123185648 0.0 19 0.0 0.0 0.0 19.46695987632567 0.0 20 0.0 0.0 0.0 19.84192992101195 0.0 21 0.0 0.0 0.0 20.182598194693092 0.0 22 0.0 0.0 0.0 20.519507370181895 0.0 23 0.0 0.0 0.0 20.936297382257997 0.0 24 0.0 0.0 0.0 21.21775985940973 0.0 25 4.698872740429571E-4 0.0 0.0 21.477607521955484 0.0 26 4.698872740429571E-4 0.0 0.0 21.701743751673973 0.0 27 4.698872740429571E-4 0.0 0.0 22.008580141624023 0.0 28 4.698872740429571E-4 0.0 0.0 22.270307353265952 0.0 29 4.698872740429571E-4 0.0 0.0 22.550830055869596 0.0 30 4.698872740429571E-4 0.0 0.0 22.988764995277634 0.0 31 4.698872740429571E-4 0.0 0.0 23.24391378508296 0.0 32 4.698872740429571E-4 0.0 0.0 23.534304120441504 0.0 33 4.698872740429571E-4 0.0 0.0 23.83879107402134 0.0 34 4.698872740429571E-4 0.0 0.0 24.100048398389227 0.0 35 4.698872740429571E-4 0.0 0.0 24.408294450161407 0.0 36 4.698872740429571E-4 0.0 0.0 24.641828425360757 0.0 37 4.698872740429571E-4 0.0 0.0 24.908724397017156 0.0 38 4.698872740429571E-4 0.0 0.0 25.176560143221643 0.0 39 4.698872740429571E-4 0.0 0.0 25.469769802224448 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCCGAT 30 2.1571414E-6 45.000004 8 CTAACGG 35 1.205699E-7 45.000004 2 CGGGCAC 65 0.0 45.000004 6 TTACGGG 35 1.205699E-7 45.000004 3 CGACTCG 35 1.205699E-7 45.000004 1 GATTAGG 30 2.1571414E-6 45.000004 2 TTTAGCG 25 3.8800626E-5 45.0 1 ACCGGGT 40 6.7702786E-9 45.0 4 CGAACAG 25 3.8800626E-5 45.0 1 TACCAGG 25 3.8800626E-5 45.0 2 TTTACGG 25 3.8800626E-5 45.0 2 TACCAAT 20 7.020321E-4 45.0 28 ACTTGCA 20 7.020321E-4 45.0 26 GGGTCGT 20 7.020321E-4 45.0 7 TTTCGCT 25 3.8800626E-5 45.0 28 AATGGTC 20 7.020321E-4 45.0 9 ATTCGCG 20 7.020321E-4 45.0 1 AATGGCC 20 7.020321E-4 45.0 11 AGGGTCG 20 7.020321E-4 45.0 6 GTAGGGT 45 3.8198777E-10 45.0 4 >>END_MODULE