SRR3548619_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548619_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	245176
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGT	3541	1.4442686070414723	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCC	3483	1.420612131693151	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	3097	1.2631742095474272	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2244	0.915260873821255	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	1888	0.7700590596143179	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT	776	0.3165073253499527	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT	615	0.25084021274513	No Hit
AACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	538	0.2194342023689105	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	508	0.20719809443012369	No Hit
AAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	486	0.19822494860834666	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	465	0.18965967305119588	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTAT	396	0.16151662479198617	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	385	0.15703005188109764	No Hit
AATGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC	329	0.1341893170620289	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT	305	0.12440043071099945	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	286	0.11665089568310112	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCC	20	7.022418E-4	45.000004	17
CGGGTCA	20	7.022418E-4	45.000004	6
CGGGTAC	35	1.2066994E-7	45.000004	6
AGACTAC	20	7.022418E-4	45.000004	19
CGAACAG	40	6.7775545E-9	45.000004	1
CATATGC	20	7.022418E-4	45.000004	33
CAAGTGC	20	7.022418E-4	45.000004	26
TTGTCTA	20	7.022418E-4	45.000004	44
TATGCAC	20	7.022418E-4	45.000004	23
ATCCGCG	20	7.022418E-4	45.000004	1
TGTTGCC	20	7.022418E-4	45.000004	41
GCCGATG	20	7.022418E-4	45.000004	9
AGTGATA	20	7.022418E-4	45.000004	45
ACTACGG	20	7.022418E-4	45.000004	2
CGGTGAC	20	7.022418E-4	45.000004	27
TCCAATT	20	7.022418E-4	45.000004	11
CCGGTCT	20	7.022418E-4	45.000004	22
CTTTACG	20	7.022418E-4	45.000004	1
CGTTTGG	20	7.022418E-4	45.000004	2
TACACCG	20	7.022418E-4	45.000004	1