SRR3548618_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548618_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	219738
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC	3660	1.665619965595391	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGT	3318	1.5099800671709036	No Hit
AATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT	2917	1.3274900108310805	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2113	0.9615997233068472	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	1571	0.7149423404235954	No Hit
AATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT	713	0.32447733209549556	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT	565	0.2571243935960098	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	564	0.25666930617371597	No Hit
AAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT	537	0.24438194577178274	No Hit
AACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	518	0.23573528474820013	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	438	0.19932829096469432	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTAT	417	0.18977145509652404	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	383	0.17429848273853407	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT	378	0.17202304562706497	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	315	0.14335253802255413	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	246	0.11195150588428036	No Hit
AATGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC	227	0.10330484486069774	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAA	25	3.8804756E-5	45.000004	15
AATCACG	25	3.8804756E-5	45.000004	1
TAGACGG	25	3.8804756E-5	45.000004	2
ATAGCGG	25	3.8804756E-5	45.000004	2
ACGGGTA	30	2.1574633E-6	45.000004	5
ATACTGG	45	3.8198777E-10	45.000004	2
TACGAGG	30	2.1574633E-6	45.000004	2
TCTCGTA	50	2.1827873E-11	45.000004	28
GCCCTAC	30	2.1574633E-6	45.000004	26
GCGATAG	30	2.1574633E-6	45.000004	1
GATTGCG	25	3.8804756E-5	45.000004	9
TATCGGG	25	3.8804756E-5	45.000004	3
GGCCTAT	25	3.8804756E-5	45.000004	8
ACGAAAT	25	3.8804756E-5	45.000004	40
TCGTTGA	20	7.020822E-4	45.0	24
ACGCCCA	20	7.020822E-4	45.0	29
GGTCGAA	20	7.020822E-4	45.0	12
GGGTCGA	20	7.020822E-4	45.0	11
CGTTGAT	20	7.020822E-4	45.0	25
ATCGTTG	20	7.020822E-4	45.0	23