##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548618_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 219738 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.973896185457225 31.0 31.0 33.0 28.0 34.0 2 31.14628785189635 31.0 31.0 34.0 28.0 34.0 3 31.33809809864475 31.0 31.0 34.0 28.0 34.0 4 35.31247212589538 37.0 35.0 37.0 33.0 37.0 5 34.89447887939273 35.0 35.0 37.0 32.0 37.0 6 34.907744677752596 35.0 35.0 37.0 32.0 37.0 7 33.794473418343664 35.0 35.0 37.0 30.0 37.0 8 34.55887010894793 37.0 35.0 37.0 31.0 37.0 9 35.930153182426345 38.0 35.0 39.0 32.0 39.0 10 35.611987912878064 37.0 35.0 39.0 30.0 39.0 11 36.03440460912541 37.0 35.0 39.0 31.0 39.0 12 35.873158033658264 37.0 35.0 39.0 31.0 39.0 13 35.91005652185785 37.0 35.0 39.0 31.0 39.0 14 36.796557718737766 38.0 35.0 40.0 31.0 41.0 15 36.894123911203344 38.0 36.0 40.0 31.0 41.0 16 36.768387807297785 38.0 35.0 40.0 31.0 41.0 17 36.69116857348297 38.0 35.0 40.0 31.0 41.0 18 36.41954509461267 38.0 35.0 40.0 30.0 41.0 19 36.361002648608796 38.0 34.0 40.0 30.0 41.0 20 36.5086694153947 38.0 35.0 40.0 30.0 41.0 21 36.619442244855236 38.0 35.0 40.0 31.0 41.0 22 36.59950031401032 38.0 35.0 40.0 31.0 41.0 23 36.54632334871529 38.0 35.0 40.0 31.0 41.0 24 36.16617972312481 38.0 34.0 40.0 30.0 41.0 25 36.311097761880056 38.0 35.0 40.0 30.0 41.0 26 36.2064913669916 38.0 35.0 40.0 30.0 41.0 27 36.079772274253884 38.0 35.0 40.0 30.0 41.0 28 35.94031983544039 38.0 34.0 40.0 29.0 41.0 29 35.68227161437712 38.0 34.0 40.0 29.0 41.0 30 35.60410124784971 38.0 34.0 40.0 28.0 41.0 31 35.501119515058846 38.0 34.0 40.0 27.0 41.0 32 35.33904923135734 38.0 34.0 40.0 27.0 41.0 33 35.36004696502198 38.0 34.0 40.0 27.0 41.0 34 35.150356333451654 38.0 34.0 40.0 26.0 41.0 35 35.162029325833494 38.0 34.0 40.0 26.0 41.0 36 35.017370686908954 38.0 34.0 40.0 25.0 41.0 37 34.81984909301077 38.0 33.0 40.0 25.0 41.0 38 34.79689903430449 38.0 33.0 40.0 25.0 41.0 39 34.65044280006189 37.0 33.0 40.0 24.0 41.0 40 34.43126814661096 37.0 33.0 40.0 23.0 41.0 41 34.43763026877463 37.0 33.0 40.0 23.0 41.0 42 34.408390901892254 37.0 33.0 40.0 23.0 41.0 43 34.42015491175855 37.0 33.0 40.0 23.0 41.0 44 34.290969245192 37.0 33.0 40.0 23.0 41.0 45 34.073551229191125 37.0 33.0 40.0 23.0 41.0 46 33.91935395789531 37.0 33.0 40.0 23.0 41.0 47 33.74496445767232 37.0 33.0 40.0 22.0 41.0 48 33.63305390965604 36.0 32.0 40.0 22.0 41.0 49 33.465062938590506 36.0 32.0 40.0 20.0 41.0 50 33.340728503945606 36.0 32.0 39.0 20.0 40.0 51 31.23667731571235 35.0 28.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 3.0 11 8.0 12 12.0 13 6.0 14 18.0 15 30.0 16 64.0 17 108.0 18 252.0 19 459.0 20 689.0 21 1045.0 22 1468.0 23 1923.0 24 2277.0 25 2658.0 26 2900.0 27 3444.0 28 4086.0 29 5129.0 30 6431.0 31 8137.0 32 10283.0 33 13482.0 34 19134.0 35 21059.0 36 24059.0 37 31440.0 38 37718.0 39 21411.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.83583176328173 36.48754425725182 17.68378705549336 22.992836923973094 2 24.419080905441938 36.40926922061728 17.439860197143872 21.73178967679691 3 20.2887074607032 30.57777899134424 24.283009766176082 24.850503781776478 4 24.881904813914755 32.55558892863319 16.912868962127625 25.649637295324435 5 16.599313728167182 38.10629021835095 18.83060735967379 26.463788693808084 6 18.3805258990252 38.43986929889232 23.403325778882124 19.776279023200356 7 73.06519582411781 15.040184219388545 6.925520392467393 4.96909956402625 8 76.64991944952625 7.54307402452011 4.985937798651121 10.821068727302514 9 72.8531250853289 11.519627920523533 9.741146274199274 5.886100719948302 10 33.14720257761516 34.09514967825319 13.888813040985173 18.868834703146476 11 26.83286459328837 29.253929679891506 24.559247831508433 19.353957895311687 12 26.381872957795196 25.700151999199043 31.311835003504175 16.60614003950159 13 26.283574074579725 28.63410061072732 25.20865758312172 19.873667731571235 14 18.76917055766413 30.897705449216794 31.80560485669297 18.527519136426108 15 18.504309677889122 32.71896531323667 26.606231056986047 22.170493951888158 16 19.627010348687985 28.91670989997178 29.687172905915226 21.769106845425007 17 18.304981386924428 29.151535009875396 27.99606804467138 24.547415558528794 18 21.579335390328485 29.405928878937644 25.67512219097289 23.33961353976099 19 20.211797686335544 34.38777089078812 26.336364215565812 19.064067207310526 20 22.270613184792797 34.188442599823425 22.53501897714551 21.005925238238266 21 20.4507185830398 31.469295251617837 25.40070447532971 22.67928169001265 22 20.191318752332325 31.527091354249155 24.859605530222357 23.42198436319617 23 21.792771391384285 31.092482865958548 21.653514640162374 25.461231102494793 24 18.12522185511837 36.2968626273107 23.78605430103123 21.791861216539697 25 22.284265807461615 28.16718091545386 23.35645177438586 26.192101502698666 26 22.919112761561497 31.324577451328402 21.26486998152345 24.491439805586655 27 19.16964748928269 28.790650683996393 26.428291874869164 25.611409951851748 28 24.738552275892197 29.241642319489575 23.72552767386615 22.29427773075208 29 20.663244409251018 32.91419781740072 22.348888221427334 24.073669551920922 30 24.85186904404336 28.935823571708124 23.36236791087568 22.849939473372835 31 27.536884835576913 30.367983689666783 19.169192401860396 22.925939072895904 32 22.009393004396145 28.398820413401417 21.967980048967405 27.623806533235033 33 25.45167426662662 27.046300594344174 25.03117348842713 22.470851650602082 34 20.569951487680786 29.793208275309684 22.83856228781549 26.798277949194038 35 23.15621330857658 27.565555343181426 27.033558146519947 22.24467320172205 36 23.752377831781484 28.77699806132758 24.687127397172997 22.783496709717937 37 20.88987794555334 31.064267445776334 22.321582976089708 25.72427163258062 38 24.6206846335181 28.258653487334918 26.05056931436529 21.070092564781696 39 20.6054483066197 26.388244181707304 25.355650820522623 27.65065669115037 40 22.586898943287007 26.859259663781415 28.433407057495746 22.12043433543584 41 20.347413738179103 25.614140476385515 30.95186085246976 23.08658493296562 42 24.519200138346577 25.722451282891445 26.395525580464007 23.362822998297972 43 21.999381081105682 25.21229828250007 27.384885636530775 25.40343499986347 44 22.297008255285842 24.589283601379826 26.036916691696476 27.07679145163786 45 26.89248104560886 25.22913651712494 25.767049850276237 22.11133258698996 46 20.392467392986195 23.962628220881232 32.00356788539078 23.64133650074179 47 22.640144171695383 27.457699624097785 25.068945744477517 24.83321045972931 48 21.092846935896386 25.54951806241979 30.485851332040887 22.87178366964294 49 23.052453376293585 23.445648909155448 28.58631643138647 24.915581283164496 50 20.87440497319535 23.15757857084346 27.515495726729107 28.452520729232084 51 20.387461431340963 22.34342717235981 31.538923627228794 25.73018776907044 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2472.0 1 2020.0 2 1568.0 3 1086.5 4 605.0 5 571.5 6 538.0 7 588.0 8 638.0 9 693.0 10 748.0 11 813.0 12 878.0 13 882.5 14 887.0 15 870.0 16 853.0 17 859.5 18 866.0 19 747.5 20 629.0 21 602.0 22 575.0 23 584.0 24 593.0 25 749.0 26 1064.5 27 1224.0 28 1600.5 29 1977.0 30 2225.0 31 2473.0 32 3255.0 33 4037.0 34 4337.5 35 4638.0 36 4901.0 37 5164.0 38 5615.0 39 6066.0 40 6901.0 41 7736.0 42 9266.5 43 10797.0 44 16198.5 45 21600.0 46 22497.5 47 23395.0 48 22401.5 49 21408.0 50 20421.0 51 19434.0 52 17913.5 53 16393.0 54 14701.0 55 13009.0 56 11863.0 57 10717.0 58 9939.5 59 9162.0 60 8471.0 61 7780.0 62 6744.0 63 5708.0 64 4872.5 65 4037.0 66 3400.0 67 2763.0 68 2319.5 69 1876.0 70 1729.5 71 1583.0 72 1465.5 73 1348.0 74 1220.5 75 806.0 76 519.0 77 512.0 78 505.0 79 383.5 80 262.0 81 193.5 82 125.0 83 91.5 84 58.0 85 58.5 86 59.0 87 38.5 88 18.0 89 13.0 90 8.0 91 5.5 92 3.0 93 3.5 94 4.0 95 2.5 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 219738.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.436574465954905 #Duplication Level Percentage of deduplicated Percentage of total 1 79.88509336164367 29.107391529912896 2 7.952288765378131 5.795083235489538 3 2.6353587709985637 2.880703383119897 4 1.3813776306750765 2.0133067562278715 5 0.8405670392805845 1.5313691760187134 6 0.6881908449384875 1.5045190181033776 7 0.5557984137887966 1.4175973204452577 8 0.5033410354087304 1.467201849475284 9 0.4059201898457503 1.3311307102094312 >10 4.876038218947105 37.92061455005506 >50 0.23231124711172174 5.324977928260019 >100 0.03122462998813464 2.2080841729696274 >500 0.006244925997626928 1.3183882623852041 >1k 0.006244925997626928 6.1796321073278175 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC 3660 1.665619965595391 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGT 3318 1.5099800671709036 No Hit AATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT 2917 1.3274900108310805 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2113 0.9615997233068472 No Hit CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT 1571 0.7149423404235954 No Hit AATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT 713 0.32447733209549556 No Hit AATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT 565 0.2571243935960098 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 564 0.25666930617371597 No Hit AAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT 537 0.24438194577178274 No Hit AACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG 518 0.23573528474820013 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 438 0.19932829096469432 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTAT 417 0.18977145509652404 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 383 0.17429848273853407 No Hit AAAAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT 378 0.17202304562706497 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 315 0.14335253802255413 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 246 0.11195150588428036 No Hit AATGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC 227 0.10330484486069774 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9379351773475685 0.0 2 0.0 0.0 0.0 1.157287314893191 0.0 3 0.0 0.0 0.0 1.706577833601835 0.0 4 0.0 0.0 0.0 4.554059834894283 0.0 5 0.0 0.0 0.0 4.922225559529986 0.0 6 0.0 0.0 0.0 6.574647989878856 0.0 7 0.0 0.0 0.0 7.819312089852461 0.0 8 0.0 0.0 0.0 8.702181689102476 0.0 9 0.0 0.0 0.0 11.351700661697112 0.0 10 0.0 0.0 0.0 12.884435099982706 0.0 11 0.0 0.0 0.0 16.102358263022328 0.0 12 0.0 0.0 0.0 16.919240186039737 0.0 13 0.0 0.0 0.0 17.338830789394642 0.0 14 0.0 0.0 0.0 17.862636412454833 0.0 15 0.0 0.0 0.0 18.16481446085793 0.0 16 0.0 0.0 0.0 18.610800134705876 0.0 17 0.0 0.0 0.0 19.143707506211943 0.0 18 0.0 0.0 0.0 19.99472098590139 0.0 19 0.0 0.0 0.0 20.27550992545668 0.0 20 0.0 0.0 0.0 20.616370404754754 0.0 21 0.0 0.0 0.0 20.952680009829887 0.0 22 0.0 0.0 0.0 21.286714177793556 0.0 23 0.0 0.0 0.0 21.652604465317786 0.0 24 0.0 0.0 0.0 21.923381481582613 0.0 25 0.0 0.0 0.0 22.139092919749885 0.0 26 0.0 0.0 0.0 22.360720494406976 0.0 27 4.5508742229382265E-4 0.0 0.0 22.597365953999763 0.0 28 4.5508742229382265E-4 0.0 0.0 22.844023336883016 0.0 29 4.5508742229382265E-4 0.0 0.0 23.100237555634436 0.0 30 4.5508742229382265E-4 0.0 0.0 23.462942231202614 0.0 31 4.5508742229382265E-4 0.0 0.0 23.703228390173752 0.0 32 4.5508742229382265E-4 0.0 0.0 23.97582575612775 0.0 33 4.5508742229382265E-4 0.0 0.0 24.26116556990598 0.0 34 4.5508742229382265E-4 0.0 0.0 24.50190681629941 0.0 35 4.5508742229382265E-4 0.0 0.0 24.81455187541527 0.0 36 4.5508742229382265E-4 0.0 0.0 25.04710154820741 0.0 37 4.5508742229382265E-4 0.0 0.0 25.289208056867725 0.0 38 4.5508742229382265E-4 0.0 0.0 25.54587736304144 0.0 39 4.5508742229382265E-4 0.0 0.0 25.87445048193758 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACAA 25 3.8804756E-5 45.000004 15 AATCACG 25 3.8804756E-5 45.000004 1 TAGACGG 25 3.8804756E-5 45.000004 2 ATAGCGG 25 3.8804756E-5 45.000004 2 ACGGGTA 30 2.1574633E-6 45.000004 5 ATACTGG 45 3.8198777E-10 45.000004 2 TACGAGG 30 2.1574633E-6 45.000004 2 TCTCGTA 50 2.1827873E-11 45.000004 28 GCCCTAC 30 2.1574633E-6 45.000004 26 GCGATAG 30 2.1574633E-6 45.000004 1 GATTGCG 25 3.8804756E-5 45.000004 9 TATCGGG 25 3.8804756E-5 45.000004 3 GGCCTAT 25 3.8804756E-5 45.000004 8 ACGAAAT 25 3.8804756E-5 45.000004 40 TCGTTGA 20 7.020822E-4 45.0 24 ACGCCCA 20 7.020822E-4 45.0 29 GGTCGAA 20 7.020822E-4 45.0 12 GGGTCGA 20 7.020822E-4 45.0 11 CGTTGAT 20 7.020822E-4 45.0 25 ATCGTTG 20 7.020822E-4 45.0 23 >>END_MODULE