SRR3548617_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548617_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	255736
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC	3816	1.4921637939124721	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGT	3783	1.4792598617324115	No Hit
AATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT	3239	1.2665404948853505	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2619	1.0241029811993618	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	1741	0.6807801795601715	No Hit
AATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT	770	0.3010917508680827	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	624	0.24400162667751116	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT	599	0.23422592048049554	No Hit
AAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT	542	0.21193731035129976	No Hit
AACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	530	0.20724497137673226	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	515	0.20137954765852284	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTAT	465	0.1818281352644915	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	404	0.15797541214377328	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT	347	0.13568680201457753	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	343	0.13412268902305505	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	335	0.13099446304001	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCCC	20	7.02299E-4	45.0	13
TCACGCC	25	3.8822724E-5	45.0	43
CAGCGCG	20	7.02299E-4	45.0	28
CCGGGTA	20	7.02299E-4	45.0	5
GTACCGG	25	3.8822724E-5	45.0	2
TACCCCC	45	3.8198777E-10	45.0	14
GTCGAAC	25	3.8822724E-5	45.0	13
GGTCGAA	25	3.8822724E-5	45.0	12
CTATCCG	25	3.8822724E-5	45.0	1
GACAATG	25	3.8822724E-5	45.0	14
GCTATGT	20	7.02299E-4	45.0	15
GGCCGAT	20	7.02299E-4	45.0	8
GATCACG	25	3.8822724E-5	45.0	1
CAATTGG	35	1.2069722E-7	45.0	2
CAATTAC	20	7.02299E-4	45.0	22
CGACATG	40	6.7793735E-9	45.0	1
TTCCGCA	25	3.8822724E-5	45.0	41
CGCTGGA	20	7.02299E-4	45.0	19
ATCACGC	25	3.8822724E-5	45.0	42
TAGCACG	20	7.02299E-4	45.0	1