##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548617_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 255736 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.00088372384021 31.0 31.0 33.0 28.0 34.0 2 31.18075280758282 31.0 31.0 34.0 28.0 34.0 3 31.379113617167704 31.0 31.0 34.0 28.0 34.0 4 35.33404761159946 37.0 35.0 37.0 33.0 37.0 5 34.95294366065004 35.0 35.0 37.0 32.0 37.0 6 34.95962633340633 35.0 35.0 37.0 32.0 37.0 7 32.55608518159352 35.0 35.0 37.0 25.0 37.0 8 33.99124878781243 36.0 35.0 37.0 28.0 37.0 9 34.32009963399756 38.0 34.0 39.0 28.0 39.0 10 34.84209497294084 37.0 34.0 39.0 27.0 39.0 11 35.77858807520255 37.0 35.0 39.0 30.0 39.0 12 35.82830340663809 37.0 35.0 39.0 31.0 39.0 13 35.96393546469797 37.0 35.0 39.0 31.0 39.0 14 36.90062017080114 39.0 36.0 40.0 31.0 41.0 15 36.98522695279507 39.0 36.0 40.0 31.0 41.0 16 36.89090702912378 38.0 35.0 40.0 31.0 41.0 17 36.813882284856255 38.0 35.0 40.0 31.0 41.0 18 36.58199080301561 38.0 35.0 40.0 31.0 41.0 19 36.49839287390121 38.0 35.0 40.0 30.0 41.0 20 36.60314934150843 38.0 35.0 40.0 31.0 41.0 21 36.71066255826321 38.0 35.0 40.0 31.0 41.0 22 36.71744298808146 38.0 35.0 40.0 31.0 41.0 23 36.65994228423061 38.0 35.0 40.0 31.0 41.0 24 36.31544639784778 38.0 35.0 40.0 30.0 41.0 25 36.43986376575844 38.0 35.0 40.0 30.0 41.0 26 36.33396940594989 38.0 35.0 40.0 30.0 41.0 27 36.230558075515376 38.0 35.0 40.0 30.0 41.0 28 36.09269715644258 38.0 35.0 40.0 30.0 41.0 29 35.73336174805268 38.0 34.0 40.0 29.0 41.0 30 35.72005896705978 38.0 34.0 40.0 29.0 41.0 31 35.644672631150875 38.0 34.0 40.0 29.0 41.0 32 35.53954859699065 38.0 34.0 40.0 28.0 41.0 33 35.53880564331968 38.0 34.0 40.0 28.0 41.0 34 35.30392670566522 38.0 34.0 40.0 27.0 41.0 35 35.26257546845184 38.0 34.0 40.0 27.0 41.0 36 35.14132542934902 38.0 34.0 40.0 26.0 41.0 37 34.93139409390935 38.0 34.0 40.0 25.0 41.0 38 34.887360402915505 38.0 34.0 40.0 25.0 41.0 39 34.80150624081084 38.0 33.0 40.0 24.0 41.0 40 34.6042246691901 37.0 33.0 40.0 24.0 41.0 41 34.55388369255795 37.0 33.0 40.0 24.0 41.0 42 34.51676729126912 37.0 33.0 40.0 24.0 41.0 43 34.52508837238402 37.0 33.0 40.0 24.0 41.0 44 34.339514186504836 37.0 33.0 40.0 23.0 41.0 45 34.11593987549661 37.0 33.0 40.0 23.0 41.0 46 34.01225873557106 37.0 33.0 40.0 23.0 41.0 47 33.85535865110896 37.0 33.0 40.0 22.0 41.0 48 33.781849250789875 37.0 33.0 40.0 22.0 41.0 49 33.62555526011199 36.0 32.0 40.0 21.0 41.0 50 33.42019504489004 36.0 32.0 40.0 20.0 41.0 51 31.393120249006788 35.0 29.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 5.0 11 7.0 12 4.0 13 9.0 14 17.0 15 25.0 16 64.0 17 127.0 18 260.0 19 467.0 20 819.0 21 1147.0 22 1581.0 23 2221.0 24 2595.0 25 2936.0 26 3373.0 27 3942.0 28 4765.0 29 6020.0 30 7409.0 31 9416.0 32 12113.0 33 15767.0 34 22234.0 35 25049.0 36 29122.0 37 38246.0 38 42125.0 39 23868.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.78599806049989 36.406685018925764 17.729220758907623 23.07809616166672 2 24.648074576907437 35.90069446616824 17.59001470266212 21.86121625426221 3 20.59545781587262 30.621813119779773 23.93874933525198 24.84397972909563 4 24.619138486564268 32.643429161322615 17.06447273751056 25.672959614602558 5 16.600713235524132 38.16944036037163 18.804157412331467 26.425688991772766 6 18.279006475427785 38.45919229205118 23.318969562361186 19.94283167015985 7 70.53875871992993 18.182813526449152 6.548550067256858 4.7298776863640635 8 77.05289830137329 7.542543873369412 4.966058748083961 10.438499077173336 9 70.01751806550504 15.11285075233835 9.19424719241718 5.6753839897394185 10 33.15958644852504 34.18642662745957 13.89049644946351 18.76349047455188 11 26.99854537491788 29.384599743485467 24.448650170488317 19.16820471110833 12 26.24386085650827 25.786357806487942 31.363984734257205 16.605796602746583 13 26.2090593424469 28.607626614946664 25.251431163387245 19.931882879219195 14 18.88744642913004 31.173553977539335 31.458613570244314 18.480386023086307 15 18.50032846372822 32.861622923640006 26.595786279600837 22.042262333030937 16 19.66090030343792 29.13629680608127 29.495260737635686 21.70754215284512 17 18.59534832796321 29.06121938248819 28.231457440485503 24.1119748490631 18 21.549175712453465 29.744736759783525 25.44420808959239 23.261879438170613 19 20.119967466449776 34.42651797165827 26.250899364970127 19.202615196921826 20 22.277661338255076 34.10626583664404 22.663997247161134 20.95207557793975 21 20.611489974035724 31.438280101354522 25.301482779115965 22.648747145493793 22 20.1700190821785 31.578659242343665 24.804094847811804 23.447226827666032 23 21.86317139550161 31.301420214596305 21.566380955360216 25.26902743454187 24 18.155832577345386 36.17871555041136 24.016172928332345 21.649278943910907 25 22.32341164325711 28.469984671692682 23.460912816341853 25.745690868708355 26 22.73633747301905 31.117636938092406 21.39550161103638 24.75052397785216 27 19.213172959614603 28.949776331842216 26.515234460537428 25.321816248005756 28 24.68835048643914 29.381471517502423 23.848812838239432 22.081365157819 29 20.310789251415525 33.21433040322833 22.431726467920043 24.043153877436104 30 24.46233615916414 28.906372196327464 23.59855475959583 23.032736884912566 31 27.545202865455 30.414959176650918 19.296070948165294 22.74376700972878 32 22.046563643757626 28.38747771138987 22.39809803860231 27.167860606250194 33 25.445381174336035 26.986814527481467 25.090327525260424 22.477476772922074 34 20.523508618262586 29.97700753902462 22.949838896361875 26.549644946350924 35 22.977601901961396 27.814621328244755 27.087699815434668 22.120076954359185 36 23.87110144836863 29.02055244470861 24.49400944724247 22.614336659680294 37 20.68343917164576 31.22438764976382 22.365642694028217 25.726530484562204 38 24.502612068695843 28.46372821972659 26.00455156880533 21.029108142772234 39 20.599759126599306 26.648575093064725 25.289751931679543 27.461913848656426 40 22.453624049801356 26.93324365752182 28.33116964369506 22.28196264898176 41 20.192307692307693 25.657709512935213 30.947148622016456 23.202834172740637 42 24.41384865642694 26.037788969875187 26.27670722933025 23.271655144367628 43 22.190462038977696 25.288578846935906 27.18936715988363 25.33159195420277 44 22.209622423123847 24.628914192761286 26.275534144586604 26.88592923952826 45 26.83978790627835 25.563080676948104 25.64949791972972 21.947633497043824 46 20.486751962961804 24.08303875871993 31.84964181812494 23.580567460193326 47 22.582663371601967 27.156129758813773 25.362092157537457 24.8991147120468 48 20.974364188068947 25.736306190759223 30.45914536866143 22.830184252510403 49 22.932633653455127 23.66072825100885 28.559530140457344 24.847107955078677 50 21.017377295335816 23.238417743297777 27.52017705759064 28.224027903775767 51 20.29866737573122 22.612772546688774 31.707307535896394 25.38125254168361 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3074.0 1 2415.0 2 1756.0 3 1217.5 4 679.0 5 663.5 6 648.0 7 683.5 8 719.0 9 799.5 10 880.0 11 939.5 12 999.0 13 1050.0 14 1101.0 15 1069.5 16 1038.0 17 992.0 18 946.0 19 883.5 20 821.0 21 775.0 22 729.0 23 747.5 24 766.0 25 943.0 26 1369.5 27 1619.0 28 1914.0 29 2209.0 30 2636.0 31 3063.0 32 3917.5 33 4772.0 34 5115.5 35 5459.0 36 5816.5 37 6174.0 38 6642.5 39 7111.0 40 8297.0 41 9483.0 42 11072.0 43 12661.0 44 19211.0 45 25761.0 46 26270.5 47 26780.0 48 25959.5 49 25139.0 50 23819.5 51 22500.0 52 20619.5 53 18739.0 54 16816.5 55 14894.0 56 13531.0 57 12168.0 58 11509.0 59 10850.0 60 9824.5 61 8799.0 62 7507.0 63 6215.0 64 5343.0 65 4471.0 66 3755.5 67 3040.0 68 2642.0 69 2244.0 70 2030.5 71 1817.0 72 1669.0 73 1521.0 74 1360.0 75 899.0 76 599.0 77 572.5 78 546.0 79 424.5 80 303.0 81 217.0 82 131.0 83 107.5 84 84.0 85 77.0 86 70.0 87 46.0 88 22.0 89 15.5 90 9.0 91 7.5 92 6.0 93 3.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 255736.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.00965057715769 #Duplication Level Percentage of deduplicated Percentage of total 1 78.42720846936511 29.025635811931057 2 8.799011062157279 6.512966496699722 3 3.320760298794468 3.687005349266431 4 1.7306412247614822 2.5620170801138675 5 1.0660665419928788 1.972737510557763 6 0.6962714084968357 1.5461256921199988 7 0.5261656470886558 1.3631244721118654 8 0.4162836645641172 1.232521037319736 9 0.36239923082612235 1.2071042012074953 >10 4.357243230107663 35.22226045609535 >50 0.25040413325303496 5.841570995088685 >100 0.03592295582532991 2.4842024587856226 >500 0.006339345145646455 1.3998811274126444 >1k 0.0052827876213720456 5.942847311289768 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC 3816 1.4921637939124721 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGT 3783 1.4792598617324115 No Hit AATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT 3239 1.2665404948853505 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2619 1.0241029811993618 No Hit CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT 1741 0.6807801795601715 No Hit AATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT 770 0.3010917508680827 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 624 0.24400162667751116 No Hit AATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT 599 0.23422592048049554 No Hit AAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT 542 0.21193731035129976 No Hit AACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG 530 0.20724497137673226 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 515 0.20137954765852284 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTAT 465 0.1818281352644915 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 404 0.15797541214377328 No Hit AAAAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT 347 0.13568680201457753 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 343 0.13412268902305505 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 335 0.13099446304001 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.895063659398755 0.0 2 0.0 0.0 0.0 1.1085650827415772 0.0 3 0.0 0.0 0.0 1.5914849688741515 0.0 4 0.0 0.0 0.0 4.175790659117214 0.0 5 0.0 0.0 0.0 4.506209528576345 0.0 6 0.0 0.0 0.0 5.976084712359621 0.0 7 0.0 0.0 0.0 7.093643444802453 0.0 8 0.0 0.0 0.0 7.957033816122877 0.0 9 0.0 0.0 0.0 10.556198579785404 0.0 10 0.0 0.0 0.0 12.05696499515125 0.0 11 0.0 0.0 0.0 15.083523633747301 0.0 12 0.0 0.0 0.0 15.88747771138987 0.0 13 0.0 0.0 0.0 16.308224106109424 0.0 14 0.0 0.0 0.0 16.846670003441048 0.0 15 0.0 0.0 0.0 17.12938342665874 0.0 16 0.0 0.0 0.0 17.629508555698063 0.0 17 0.0 0.0 0.0 18.14605687114837 0.0 18 0.0 0.0 0.0 18.969953389432852 0.0 19 0.0 0.0 0.0 19.268698970813652 0.0 20 0.0 0.0 0.0 19.60967560296556 0.0 21 0.0 0.0 0.0 19.949479150373822 0.0 22 0.0 0.0 0.0 20.28419933055964 0.0 23 0.0 0.0 0.0 20.63338755591704 0.0 24 0.0 0.0 0.0 20.891857227766135 0.0 25 0.0 0.0 0.0 21.111615103075046 0.0 26 0.0 0.0 0.0 21.348969249538587 0.0 27 3.910282478806269E-4 0.0 0.0 21.597663215190664 0.0 28 3.910282478806269E-4 0.0 0.0 21.84361998310758 0.0 29 3.910282478806269E-4 0.0 0.0 22.109519191666404 0.0 30 3.910282478806269E-4 0.0 0.0 22.512278286983452 0.0 31 3.910282478806269E-4 0.0 0.0 22.769183845841024 0.0 32 3.910282478806269E-4 0.0 0.0 23.028044545938 0.0 33 3.910282478806269E-4 0.0 0.0 23.280648794068885 0.0 34 3.910282478806269E-4 0.0 0.0 23.536772296430694 0.0 35 3.910282478806269E-4 0.0 0.0 23.82026777614415 0.0 36 3.910282478806269E-4 0.0 0.0 24.065442487565303 0.0 37 3.910282478806269E-4 0.0 0.0 24.30944411424281 0.0 38 3.910282478806269E-4 0.0 0.0 24.562048362373698 0.0 39 3.910282478806269E-4 0.0 0.0 24.8768261019176 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCCC 20 7.02299E-4 45.0 13 TCACGCC 25 3.8822724E-5 45.0 43 CAGCGCG 20 7.02299E-4 45.0 28 CCGGGTA 20 7.02299E-4 45.0 5 GTACCGG 25 3.8822724E-5 45.0 2 TACCCCC 45 3.8198777E-10 45.0 14 GTCGAAC 25 3.8822724E-5 45.0 13 GGTCGAA 25 3.8822724E-5 45.0 12 CTATCCG 25 3.8822724E-5 45.0 1 GACAATG 25 3.8822724E-5 45.0 14 GCTATGT 20 7.02299E-4 45.0 15 GGCCGAT 20 7.02299E-4 45.0 8 GATCACG 25 3.8822724E-5 45.0 1 CAATTGG 35 1.2069722E-7 45.0 2 CAATTAC 20 7.02299E-4 45.0 22 CGACATG 40 6.7793735E-9 45.0 1 TTCCGCA 25 3.8822724E-5 45.0 41 CGCTGGA 20 7.02299E-4 45.0 19 ATCACGC 25 3.8822724E-5 45.0 42 TAGCACG 20 7.02299E-4 45.0 1 >>END_MODULE