##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548616_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 262079 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.979433682210328 31.0 31.0 33.0 28.0 34.0 2 31.147642504740936 31.0 31.0 34.0 28.0 34.0 3 31.353301866994304 31.0 31.0 34.0 28.0 34.0 4 35.35789971726083 37.0 35.0 37.0 33.0 37.0 5 34.97205804356702 35.0 35.0 37.0 32.0 37.0 6 34.97450005532683 35.0 35.0 37.0 32.0 37.0 7 33.8998279144838 35.0 35.0 37.0 30.0 37.0 8 34.6352168620912 37.0 35.0 37.0 32.0 37.0 9 35.929299943910046 39.0 35.0 39.0 32.0 39.0 10 35.60911404576483 37.0 35.0 39.0 30.0 39.0 11 36.07757966109455 37.0 35.0 39.0 31.0 39.0 12 36.038576154518296 37.0 35.0 39.0 31.0 39.0 13 36.02743447586415 37.0 35.0 39.0 31.0 39.0 14 37.034958924599074 39.0 36.0 40.0 32.0 41.0 15 37.02891876113691 39.0 36.0 40.0 32.0 41.0 16 36.95170540180633 38.0 36.0 40.0 31.0 41.0 17 36.86861595167869 38.0 35.0 40.0 31.0 41.0 18 36.653138939022206 38.0 35.0 40.0 31.0 41.0 19 36.598254724720405 38.0 35.0 40.0 31.0 41.0 20 36.652371994703884 38.0 35.0 40.0 31.0 41.0 21 36.738945127232626 38.0 35.0 40.0 31.0 41.0 22 36.70245994528367 38.0 35.0 40.0 31.0 41.0 23 36.63464833122837 38.0 35.0 40.0 31.0 41.0 24 36.32376878727407 38.0 35.0 40.0 30.0 41.0 25 36.402054342392944 38.0 35.0 40.0 30.0 41.0 26 36.34633831783546 38.0 35.0 40.0 30.0 41.0 27 36.26132578344698 38.0 35.0 40.0 30.0 41.0 28 36.09600540295102 38.0 35.0 40.0 30.0 41.0 29 35.8169750342454 38.0 34.0 40.0 29.0 41.0 30 35.81550219590276 38.0 34.0 40.0 29.0 41.0 31 35.627108619919944 38.0 34.0 40.0 28.0 41.0 32 35.57857745183704 38.0 34.0 40.0 28.0 41.0 33 35.58168720118743 38.0 34.0 40.0 28.0 41.0 34 35.45208887396549 38.0 34.0 40.0 27.0 41.0 35 35.482007333666566 38.0 34.0 40.0 27.0 41.0 36 35.22151717611865 38.0 34.0 40.0 26.0 41.0 37 35.24678818218934 38.0 34.0 40.0 27.0 41.0 38 35.136271887484305 38.0 34.0 40.0 26.0 41.0 39 34.96032875583317 38.0 34.0 40.0 25.0 41.0 40 34.80339134383144 38.0 33.0 40.0 25.0 41.0 41 34.73236314241126 38.0 33.0 40.0 25.0 41.0 42 34.694946943478875 37.0 33.0 40.0 25.0 41.0 43 34.63052362074031 37.0 33.0 40.0 24.0 41.0 44 34.5931265000248 37.0 33.0 40.0 24.0 41.0 45 34.33367038183143 37.0 33.0 40.0 24.0 41.0 46 34.18743966513914 37.0 33.0 40.0 23.0 41.0 47 34.022172703650426 37.0 33.0 40.0 23.0 41.0 48 33.87839926129144 36.0 33.0 40.0 23.0 41.0 49 33.654260738174365 36.0 33.0 40.0 22.0 41.0 50 33.52777216030281 36.0 32.0 39.0 21.0 40.0 51 31.43725365252462 35.0 29.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 3.0 11 4.0 12 11.0 13 8.0 14 18.0 15 40.0 16 77.0 17 129.0 18 258.0 19 442.0 20 784.0 21 1086.0 22 1600.0 23 1998.0 24 2353.0 25 2609.0 26 3077.0 27 3798.0 28 4558.0 29 5534.0 30 7137.0 31 9294.0 32 12046.0 33 15921.0 34 22454.0 35 25200.0 36 30336.0 37 39854.0 38 46580.0 39 24867.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.796099649342374 34.10689143349906 18.512738525406462 25.584270391752106 2 24.81541825174852 34.07980036553864 18.63216816303481 22.472613219678035 3 21.94033096890632 31.132215858576995 21.464901804417753 25.462551368098936 4 22.207426005135854 32.95227774831253 17.740452306365636 27.099843940185973 5 17.576379641253208 35.807142121268775 17.42184608457755 29.194632152900464 6 19.19726494682901 38.92528588707985 21.025721251988905 20.851727914102234 7 76.40711388550781 11.889163191251493 6.697980379961767 5.005742543278934 8 79.63438505183551 6.876934054235555 5.69370304373872 7.79497785019021 9 73.38626902575179 11.003552363981854 9.882134776155281 5.728043834111088 10 32.18876750903353 33.635659476722665 14.216324085485674 19.95924892875812 11 26.22682473605287 30.162279312726316 24.203007490107943 19.407888461112872 12 25.59113854982658 24.909283078766325 30.797202370277667 18.70237600112943 13 25.53314077053102 27.56268148153801 26.321834256083086 20.58234349184788 14 19.340733137718015 31.182200786785664 30.139385452478066 19.33768062301825 15 18.383388215003873 31.2039499540215 28.566958817761055 21.845703013213573 16 19.88293606126397 28.337638650941127 27.884721782363332 23.89470350543157 17 18.525711712880465 29.27933943581897 26.600376222436743 25.594572628863816 18 21.79953372837961 28.186157608965235 25.374410006143183 24.639898656511967 19 20.8639379729013 33.062168277504114 25.219494885130057 20.85439886446453 20 23.182322887373655 31.062008020482374 24.188126480946583 21.56754261119739 21 21.185215145051682 30.845279476798982 25.103880890876418 22.86562448727292 22 20.290446773682742 29.116793028056424 25.947138076686798 24.64562212157403 23 21.50840013888942 31.0551398624079 22.148283532827886 25.288176465874795 24 19.70207456530283 31.152820332800413 25.489260871721886 23.65584423017487 25 21.926213088419903 28.70966387997512 23.73978838441844 25.624334647186537 26 23.501692237836682 29.514764632038432 22.39439253049653 24.589150599628358 27 19.161016334769286 27.174248985992772 25.54764021535491 28.11709446388303 28 20.584251313535233 29.71279652318576 27.29596800964595 22.406984153633065 29 19.980616531656487 33.18617668718211 23.35173745321067 23.481469327950734 30 21.780837075843543 27.38868814365134 25.352660838907354 25.47781394159776 31 23.73063084031914 32.68594584075794 20.485807714467775 23.097615604455147 32 21.147821839979546 27.45851441740849 22.354328275062098 29.039335467549858 33 21.1001262977957 26.623651647022463 24.459037160550825 27.81718489463101 34 19.44299238016018 30.648773843001536 23.815719687575122 26.09251408926316 35 19.430019192686174 27.286047336871704 25.129445701486958 28.15448776895516 36 21.00282739174066 31.575212054380547 23.51542855398563 23.90653199989316 37 19.070967151126187 30.820096230525913 20.16949087870451 29.93944573964339 38 20.870806130975776 29.993246311226766 22.48520484281457 26.65074271498289 39 20.436967479271516 25.774289431812548 23.62684534052709 30.161897748388846 40 22.79923229255301 26.6858466340302 22.8045741932776 27.7103468801392 41 20.066468507587405 24.99017471831013 27.366175847740564 27.577180926361898 42 23.0903658820432 27.974770966006435 22.635541191778053 26.299321960172318 43 19.916895287298868 27.094120475123912 24.978727788186006 28.010256449391214 44 22.13950755306606 23.455904517340194 24.79710316354992 29.60748476604383 45 24.921874701902862 26.02192468683107 24.362882947508194 24.693317663757874 46 21.0531938842868 23.623792825827326 29.130529344205375 26.1924839456805 47 22.221925449959745 26.330228671507445 24.392263401493445 27.055582477039366 48 21.14896653299196 25.691108406243917 27.89845809851228 25.261466962251838 49 21.422166598621025 23.232307815582324 28.04803131880082 27.29749426699583 50 20.622026182944836 23.57075538291889 26.749567878387815 29.05765055574846 51 20.625460261982074 21.984592432052928 29.775754638868435 27.61419266709656 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2663.0 1 2094.0 2 1525.0 3 1048.5 4 572.0 5 532.5 6 493.0 7 553.0 8 613.0 9 669.5 10 726.0 11 747.5 12 769.0 13 804.5 14 840.0 15 834.5 16 829.0 17 804.0 18 779.0 19 742.5 20 706.0 21 749.5 22 793.0 23 778.5 24 764.0 25 787.0 26 1233.0 27 1656.0 28 2030.0 29 2404.0 30 2574.0 31 2744.0 32 3344.5 33 3945.0 34 4214.5 35 4484.0 36 5395.5 37 6307.0 38 6569.5 39 6832.0 40 8264.5 41 9697.0 42 11190.5 43 12684.0 44 17846.5 45 23009.0 46 24052.0 47 25095.0 48 25979.0 49 26863.0 50 25946.5 51 25030.0 52 22437.5 53 19845.0 54 17681.0 55 15517.0 56 13632.0 57 11747.0 58 11124.5 59 10502.0 60 9971.0 61 9440.0 62 8306.0 63 7172.0 64 6792.0 65 6412.0 66 5676.0 67 4940.0 68 4205.0 69 3470.0 70 3259.0 71 3048.0 72 2690.5 73 2333.0 74 1828.5 75 1156.0 76 988.0 77 796.0 78 604.0 79 546.5 80 489.0 81 383.5 82 278.0 83 205.5 84 133.0 85 111.5 86 90.0 87 57.5 88 25.0 89 27.0 90 29.0 91 27.5 92 26.0 93 25.0 94 24.0 95 15.0 96 6.0 97 5.5 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 262079.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.17434989082136 #Duplication Level Percentage of deduplicated Percentage of total 1 79.515 30.354334315686604 2 8.396 6.410236833666723 3 2.827 3.237566614240559 4 1.428 2.180518865763716 5 0.899 1.71593702759242 6 0.63 1.4429904258730473 7 0.541 1.4456626303654048 8 0.44600000000000006 1.3620608041045061 9 0.42700000000000005 1.4670402663042648 >10 4.644 38.07166088961505 >50 0.192 4.641619203224969 >100 0.047 3.3807204263311394 >500 0.003 0.6791216845577119 >1k 0.005 3.610530012673884 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2264 0.8638616600338066 No Hit AATCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCT 1986 0.7577867742169346 No Hit CTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGCT 1791 0.6833817284101359 Illumina Single End Adapter 1 (95% over 21bp) AATGATACGGCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCC 1749 0.6673560262363638 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGT 1668 0.636449314901232 No Hit AAACTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCT 725 0.2766341446663029 No Hit AAAAACTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTT 550 0.20986038560891945 No Hit AATGACTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTT 504 0.19230842608526438 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 479 0.1827693176484953 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 449 0.1713223875243724 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 427 0.16292797210001564 No Hit AATGATCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCT 407 0.1552966853506004 No Hit AACTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTG 393 0.1499547846260097 TruSeq Adapter, Index 16 (95% over 21bp) AATGCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTC 304 0.11599555859111185 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCT 297 0.11332460822881651 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 282 0.10760114316675506 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 267 0.10187767810469361 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8817951838949325 0.0 2 0.0 0.0 0.0 1.1569030712113524 0.0 3 0.0 0.0 0.0 1.6086752467767353 0.0 4 0.0 0.0 0.0 3.9198104388371444 0.0 5 0.0 0.0 0.0 4.360135684278404 0.0 6 0.0 0.0 0.0 6.114568507968971 0.0 7 0.0 0.0 0.0 7.421426363806333 0.0 8 0.0 0.0 0.0 8.303221547701266 0.0 9 0.0 0.0 0.0 10.023695145356934 0.0 10 0.0 0.0 0.0 11.715169853364825 0.0 11 0.0 0.0 0.0 13.833615055002499 0.0 12 0.0 0.0 0.0 14.781420869279874 0.0 13 0.0 0.0 0.0 15.249218747019029 0.0 14 0.0 0.0 0.0 15.741055178018842 0.0 15 0.0 0.0 0.0 16.082173695717703 0.0 16 0.0 0.0 0.0 16.663296181685674 0.0 17 0.0 0.0 0.0 17.356980147207523 0.0 18 0.0 0.0 0.0 18.416202748026357 0.0 19 0.0 0.0 0.0 18.794333006459883 0.0 20 0.0 0.0 0.0 19.285024744447284 0.0 21 0.0 0.0 0.0 19.70360082265271 0.0 22 0.0 0.0 0.0 20.12828193025767 0.0 23 0.0 0.0 0.0 20.60332953040877 0.0 24 0.0 0.0 0.0 20.951697770519576 0.0 25 0.0 0.0 0.0 21.249699518084242 0.0 26 0.0 0.0 0.0 21.494282258403 0.0 27 0.0 0.0 0.0 21.83501921176439 0.0 28 0.0 0.0 0.0 22.172322086088545 0.0 29 0.0 0.0 0.0 22.48024450642745 0.0 30 0.0 0.0 0.0 22.96521277935279 0.0 31 0.0 0.0 0.0 23.251004468118392 0.0 32 0.0 0.0 0.0 23.581057620030602 0.0 33 0.0 0.0 0.0 23.93095211749129 0.0 34 0.0 0.0 0.0 24.22551978601872 0.0 35 0.0 0.0 0.0 24.603268480114775 0.0 36 0.0 0.0 0.0 24.902796485029324 0.0 37 0.0 0.0 0.0 25.19812728223169 0.0 38 0.0 0.0 0.0 25.492313386421653 0.0 39 0.0 0.0 0.0 25.81587994459686 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATTGG 30 2.1590677E-6 45.000004 2 GTCACGG 30 2.1590677E-6 45.000004 2 CTCGCGG 30 2.1590677E-6 45.000004 2 ACCGTAG 30 2.1590677E-6 45.000004 26 AATGTTC 35 1.207136E-7 45.000004 19 CTTACGG 30 2.1590677E-6 45.000004 2 TATCCGG 30 2.1590677E-6 45.000004 2 TTAGACC 20 7.02331E-4 45.0 40 GACAACG 20 7.02331E-4 45.0 1 ATAGCGG 40 6.7811925E-9 45.0 2 TAAACGG 25 3.882539E-5 45.0 2 GAATCCT 25 3.882539E-5 45.0 13 ATTCGCG 20 7.02331E-4 45.0 1 TACGGTT 20 7.02331E-4 45.0 32 TAAAACG 25 3.882539E-5 45.0 21 CGCGACC 100 0.0 45.0 10 TCGATAT 20 7.02331E-4 45.0 25 ATACTAG 20 7.02331E-4 45.0 1 AGACGAA 20 7.02331E-4 45.0 14 CCGTAGT 25 3.882539E-5 45.0 27 >>END_MODULE