SRR3548614_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548614_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	214285
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	2497	1.1652705509018364	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC	2274	1.0612035373451245	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGT	2249	1.0495368317894394	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2117	0.9879366264554216	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	1631	0.7611358704529015	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	716	0.3341344471148237	No Hit
AATGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	668	0.31173437244790814	No Hit
AACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	547	0.25526751755839183	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	528	0.2464008213360711	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	492	0.22960076533588444	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	414	0.19320064400214668	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	404	0.1885339617798726	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	353	0.16473388244627482	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTAT	297	0.13860046200154	No Hit
AATGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	273	0.12740042466808224	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	236	0.11013370044566816	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	234	0.10920036400121334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	25	3.880151E-5	45.000004	6
CATATGG	25	3.880151E-5	45.000004	2
CGTGCAA	25	3.880151E-5	45.000004	32
GGACTAA	25	3.880151E-5	45.000004	8
TCGTGCA	25	3.880151E-5	45.000004	31
TGGATCC	25	3.880151E-5	45.000004	30
TTTGATC	25	3.880151E-5	45.000004	10
CGATAGG	25	3.880151E-5	45.000004	2
TCTATTC	25	3.880151E-5	45.000004	32
AACACCG	25	3.880151E-5	45.000004	1
CGGGTAC	20	7.02043E-4	45.0	6
TAATAGG	35	1.2057535E-7	45.0	2
GGTACGG	20	7.02043E-4	45.0	8
CATGCTC	20	7.02043E-4	45.0	32
GAATGGT	20	7.02043E-4	45.0	10
TGGACGG	20	7.02043E-4	45.0	2
TCCTATC	20	7.02043E-4	45.0	26
ATTCCGG	20	7.02043E-4	45.0	2
CCCGTGC	20	7.02043E-4	45.0	28
ACTAGCA	20	7.02043E-4	45.0	35