SRR3548613_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548613_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	248917
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	2647	1.0634066777279172	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2644	1.0622014567104698	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGT	2615	1.0505509868751433	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC	2536	1.0188135000823568	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	1761	0.7074647372417312	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	781	0.3137592048755208	No Hit
AATGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	711	0.28563738113507714	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	595	0.23903550179377062	No Hit
AACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	546	0.2193502251754601	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	536	0.21533282178396815	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	436	0.1751587878690487	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	425	0.1707396441384076	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	394	0.15828569362478256	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTAT	350	0.140609118702218	No Hit
AATGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	335	0.1345830136149801	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	321	0.12895864886689137	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGCA	25	3.8819722E-5	45.000004	31
TACGCAG	25	3.8819722E-5	45.000004	25
CTAAACG	35	1.2068085E-7	45.000004	1
ACTACCG	25	3.8819722E-5	45.000004	1
CGGGATG	35	1.2068085E-7	45.000004	6
ACGTAGG	50	2.1827873E-11	45.000004	2
AATACGG	25	3.8819722E-5	45.000004	2
CCCGCTG	25	3.8819722E-5	45.000004	35
GGCTACC	25	3.8819722E-5	45.000004	8
AATCCGG	20	7.022628E-4	45.0	2
CGAAAGA	20	7.022628E-4	45.0	29
GGCAACG	20	7.022628E-4	45.0	28
TAACGGG	80	0.0	45.0	3
TAGCCCG	20	7.022628E-4	45.0	1
ATCGTTC	20	7.022628E-4	45.0	26
CTAACGG	40	6.7775545E-9	45.0	2
AATTGGC	20	7.022628E-4	45.0	41
CGCTAAC	40	6.7775545E-9	45.0	38
GTCACGG	20	7.022628E-4	45.0	2
ACGGAAC	20	7.022628E-4	45.0	5