##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548613_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 248917 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.918780155634206 31.0 31.0 33.0 28.0 34.0 2 31.088816754179103 31.0 31.0 34.0 28.0 34.0 3 31.266839950666288 31.0 31.0 34.0 28.0 34.0 4 35.22719621399904 37.0 35.0 37.0 33.0 37.0 5 34.90817421068067 35.0 35.0 37.0 32.0 37.0 6 34.90356223158724 35.0 35.0 37.0 32.0 37.0 7 32.44938674337229 35.0 35.0 37.0 25.0 37.0 8 33.90306809097008 35.0 35.0 37.0 27.0 37.0 9 34.17704696746305 37.0 34.0 39.0 27.0 39.0 10 34.74772715403126 37.0 34.0 39.0 27.0 39.0 11 35.679969628430364 37.0 35.0 39.0 30.0 39.0 12 35.8161756730155 37.0 35.0 39.0 31.0 39.0 13 35.93418288023719 37.0 35.0 39.0 31.0 39.0 14 37.00419818654411 39.0 36.0 40.0 31.0 41.0 15 37.03950312754854 39.0 36.0 40.0 32.0 41.0 16 36.96821832176991 38.0 36.0 40.0 31.0 41.0 17 36.90570752499829 38.0 36.0 40.0 31.0 41.0 18 36.668664655286705 38.0 35.0 40.0 31.0 41.0 19 36.56894466830309 38.0 35.0 40.0 30.0 41.0 20 36.58389744372622 38.0 35.0 40.0 31.0 41.0 21 36.73240076009272 38.0 35.0 40.0 31.0 41.0 22 36.67120767163352 38.0 35.0 40.0 31.0 41.0 23 36.617233857068825 38.0 35.0 40.0 31.0 41.0 24 36.29582953353929 38.0 35.0 40.0 30.0 41.0 25 36.36427805252353 38.0 35.0 40.0 30.0 41.0 26 36.249183462760676 38.0 35.0 40.0 30.0 41.0 27 36.12115283407722 38.0 35.0 40.0 30.0 41.0 28 36.02553059855293 38.0 35.0 40.0 30.0 41.0 29 35.59016459301695 38.0 34.0 40.0 27.0 41.0 30 35.669327526846295 38.0 34.0 40.0 28.0 41.0 31 35.534941365997504 38.0 34.0 40.0 27.0 41.0 32 35.41904731295974 38.0 34.0 40.0 27.0 41.0 33 35.33296641049024 38.0 34.0 40.0 27.0 41.0 34 35.186511969853406 38.0 34.0 40.0 26.0 41.0 35 35.09810499082023 38.0 34.0 40.0 26.0 41.0 36 34.772293575770234 38.0 33.0 40.0 24.0 41.0 37 34.8288304936987 38.0 33.0 40.0 25.0 41.0 38 34.70049454235749 38.0 33.0 40.0 24.0 41.0 39 34.54668021870744 37.0 33.0 40.0 24.0 41.0 40 34.38810527203847 37.0 33.0 40.0 23.0 41.0 41 34.259648798595514 37.0 33.0 40.0 23.0 41.0 42 34.20866393215409 37.0 33.0 40.0 23.0 41.0 43 34.12720304358481 37.0 33.0 40.0 23.0 41.0 44 34.04893599071176 37.0 33.0 40.0 23.0 41.0 45 33.82915188597002 37.0 33.0 40.0 22.0 41.0 46 33.66702153729958 37.0 32.0 40.0 21.0 41.0 47 33.54522591867972 36.0 32.0 40.0 20.0 41.0 48 33.41380460153385 36.0 32.0 40.0 20.0 41.0 49 33.24265518224951 36.0 32.0 39.0 20.0 41.0 50 32.97055243314036 36.0 31.0 39.0 18.0 40.0 51 30.93274063241964 34.0 28.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 6.0 11 5.0 12 2.0 13 8.0 14 18.0 15 31.0 16 58.0 17 117.0 18 273.0 19 518.0 20 846.0 21 1219.0 22 1845.0 23 2351.0 24 2708.0 25 3099.0 26 3559.0 27 4129.0 28 4925.0 29 5921.0 30 7455.0 31 9306.0 32 11805.0 33 15318.0 34 21367.0 35 24698.0 36 28996.0 37 37507.0 38 39892.0 39 20931.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.879180610404273 36.8215107847194 18.878180276959792 22.421128327916534 2 24.949682022521564 36.5495325751154 17.185246487785086 21.315538914577953 3 20.89813070220194 31.894969005732836 22.515135567277447 24.69176472478778 4 23.337498041515847 33.006986264497804 17.66090704933773 25.994608644648622 5 17.06030524230969 37.88933660617796 17.661710530016027 27.38864762149632 6 19.149756746224643 39.228337156562226 22.80278165010827 18.81912444710486 7 70.3053628317873 17.676976662903698 6.868554578433775 5.149105926875223 8 76.92604362096603 8.104307861656697 5.876657681074414 9.092990836302864 9 68.79843481963867 15.369781895169876 9.813311264397369 6.01847202079408 10 31.119610151174893 34.6565320970444 14.469481795136533 19.754375956644182 11 25.6547363177284 31.600895077475627 24.057416729271203 18.686951875524773 12 24.074691563854618 27.40351201404484 31.60451074052797 16.917285681572572 13 24.957315088965398 29.621520426487546 25.27669865858901 20.14446582595805 14 18.31976120554241 32.716527999292936 30.762864730010403 18.20084606515425 15 17.35156698819285 33.69516746546037 27.745794782999955 21.20747076334682 16 18.58450808904173 30.4916900010847 28.510306648400874 22.4134952614727 17 17.878650313156594 30.521820526520887 27.029893498636092 24.569635661686426 18 20.630973376667725 30.370364418661644 24.33984018769309 24.658822016977545 19 20.150491931045288 34.604305852955 26.24850853899091 18.996693677008803 20 22.20459028511512 34.18850460193559 23.1109164902357 20.495988622713597 21 21.743392375771844 31.41930844418019 24.39005773008674 22.447241449961233 22 19.708175817642026 32.67434526368227 24.564814777616636 23.05266414105907 23 20.741050229594606 32.20310384586026 22.209812909524057 24.84603301502107 24 18.727929390117993 33.97839440456056 24.66324116070819 22.630435044613264 25 22.041081967081396 29.170366025623 23.20492372959661 25.583628277698995 26 23.291297902513687 30.991053242647148 23.073152898355676 22.64449595648349 27 18.61905775820856 29.147868566630642 25.384365069480992 26.848708605679803 28 24.57204610372132 28.973513259439894 24.943254177095177 21.51118645974361 29 20.456618069476974 32.02874853866952 26.631367082200093 20.88326630965342 30 23.427889617824416 28.19373526115131 24.046167999775026 24.33220712124925 31 27.016636067444168 29.782216562147223 22.529598219486815 20.67154915092179 32 23.483329784627006 26.987710763025426 25.885737012739185 23.643222439608383 33 25.057750173752698 29.4202485165738 22.729263168043968 22.79273814162954 34 22.19936766070618 29.56929418239815 25.541445542088326 22.689892614807345 35 25.423735622717615 27.138765130545522 25.10917293716379 22.32832630957307 36 24.076700265550365 28.43196728226678 26.982488138616485 20.508844313566367 37 22.69350827785969 28.844152870233852 23.806730757642107 24.655608094264352 38 25.620990129239868 29.930458747293276 24.069870679784827 20.378680443682033 39 21.562609223154706 28.434377724301672 26.958785458606684 23.044227593936935 40 24.435052648071444 30.26189452709136 23.810346420694447 21.492706404142748 41 23.248311686224728 26.71010818867333 28.707962895262273 21.333617229839668 42 27.308299553666483 26.46826050450552 23.691029539967136 22.53241040186086 43 23.089624252260794 25.547873387514713 27.022260432192258 24.340241928032235 44 22.645299437161786 24.601774888818362 25.64629977060627 27.10662590341359 45 27.04154396847142 26.51687108554257 25.859222150355336 20.582362795630672 46 21.553369195354275 24.749615333625265 31.06939260878124 22.627622862239217 47 23.946536395666026 27.95148583664434 24.1578518140585 23.94412595363113 48 21.77151419951229 25.91827798021027 30.511375277703007 21.79883254257443 49 23.1133269322706 23.701876529124167 28.85058071566024 24.334215822944998 50 20.823808739459338 25.180280977193203 26.638598408304777 27.357311875042683 51 21.089760843976105 23.586978792127496 30.749205558479332 24.574054805417067 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3087.0 1 2376.5 2 1666.0 3 1208.0 4 750.0 5 693.5 6 637.0 7 725.5 8 814.0 9 926.0 10 1038.0 11 1065.0 12 1092.0 13 1087.0 14 1082.0 15 1027.0 16 972.0 17 948.5 18 925.0 19 860.5 20 796.0 21 861.5 22 927.0 23 967.5 24 1008.0 25 1273.0 26 1746.5 27 1955.0 28 2262.0 29 2569.0 30 3103.5 31 3638.0 32 4175.0 33 4712.0 34 4910.5 35 5109.0 36 5586.0 37 6063.0 38 7395.5 39 8728.0 40 9151.5 41 9575.0 42 11299.5 43 13024.0 44 18750.5 45 24477.0 46 24859.0 47 25241.0 48 25249.0 49 25257.0 50 23718.0 51 22179.0 52 19603.0 53 17027.0 54 15173.5 55 13320.0 56 12082.0 57 10844.0 58 9951.0 59 9058.0 60 7877.5 61 6697.0 62 6042.5 63 5388.0 64 5223.5 65 5059.0 66 4121.0 67 3183.0 68 2838.5 69 2494.0 70 2135.5 71 1777.0 72 1646.5 73 1516.0 74 1397.5 75 1096.0 76 913.0 77 732.0 78 551.0 79 511.0 80 471.0 81 381.0 82 291.0 83 183.5 84 76.0 85 59.5 86 43.0 87 33.0 88 23.0 89 23.0 90 23.0 91 16.0 92 9.0 93 9.0 94 9.0 95 7.5 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 248917.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.100181988373635 #Duplication Level Percentage of deduplicated Percentage of total 1 79.2554995016799 30.9890445409514 2 8.705703453306892 6.807891787222246 3 3.1984957925344455 3.751853027314326 4 1.7199749298755742 2.6900533109430054 5 0.9997225846887297 1.9544667499608304 6 0.638055215921584 1.4968845036698981 7 0.4767433497385104 1.304852621556583 8 0.3976286128206973 1.2437880900059055 9 0.36680468934622457 1.2907917096863615 >10 3.968066415280446 34.1306539930981 >50 0.2219322490162031 5.322256013048526 >100 0.0410985646326302 2.8419111591414006 >500 0.005137320579078775 1.2731151347637968 >1k 0.005137320579078775 4.902437358637618 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT 2647 1.0634066777279172 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2644 1.0622014567104698 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGT 2615 1.0505509868751433 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC 2536 1.0188135000823568 No Hit CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT 1761 0.7074647372417312 No Hit AATGATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT 781 0.3137592048755208 No Hit AATGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT 711 0.28563738113507714 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 595 0.23903550179377062 No Hit AACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG 546 0.2193502251754601 No Hit AAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT 536 0.21533282178396815 No Hit AAAAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT 436 0.1751587878690487 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 425 0.1707396441384076 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 394 0.15828569362478256 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTAT 350 0.140609118702218 No Hit AATGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC 335 0.1345830136149801 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 321 0.12895864886689137 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9585524492099776 0.0 2 0.0 0.0 0.0 1.2257097747441918 0.0 3 0.0 0.0 0.0 1.784530586500721 0.0 4 0.0 0.0 0.0 4.371336630282383 0.0 5 0.0 0.0 0.0 4.792360505710739 0.0 6 0.0 0.0 0.0 6.435880233170093 0.0 7 0.0 0.0 0.0 7.776889485250104 0.0 8 0.0 0.0 0.0 8.589610191348923 0.0 9 0.0 0.0 0.0 10.761820205128616 0.0 10 0.0 0.0 0.0 12.384851175291363 0.0 11 0.0 0.0 0.0 14.970050257716428 0.0 12 0.0 0.0 0.0 15.90088262352511 0.0 13 0.0 0.0 0.0 16.421136362723317 0.0 14 0.0 0.0 0.0 16.967101483627072 0.0 15 0.0 0.0 0.0 17.270415439684715 0.0 16 0.0 0.0 0.0 17.877445092139148 0.0 17 0.0 0.0 0.0 18.490902590019967 0.0 18 0.0 0.0 0.0 19.58604675454067 0.0 19 0.0 0.0 0.0 19.91989297637365 0.0 20 0.0 0.0 0.0 20.347746437567544 0.0 21 0.0 0.0 0.0 20.72939975975928 0.0 22 0.0 0.0 0.0 21.13194357958677 0.0 23 0.0 0.0 0.0 21.56060052145896 0.0 24 0.0 0.0 0.0 21.848246604289784 0.0 25 0.0 0.0 0.0 22.12906310135507 0.0 26 0.0 0.0 0.0 22.356448133313513 0.0 27 0.0 0.0 0.0 22.64369247580519 0.0 28 0.0 0.0 0.0 22.90723413828706 0.0 29 0.0 0.0 0.0 23.20773591197066 0.0 30 0.0 0.0 0.0 23.66973730199223 0.0 31 0.0 0.0 0.0 23.938099848543892 0.0 32 0.0 0.0 0.0 24.300067894117316 0.0 33 0.0 0.0 0.0 24.573653065077917 0.0 34 4.0174033914919434E-4 0.0 0.0 24.82233033501127 0.0 35 4.0174033914919434E-4 0.0 0.0 25.092299842919527 0.0 36 4.0174033914919434E-4 0.0 0.0 25.343789295226923 0.0 37 4.0174033914919434E-4 0.0 0.0 25.620186648561567 0.0 38 4.0174033914919434E-4 0.0 0.0 25.884130051382588 0.0 39 4.0174033914919434E-4 0.0 0.0 26.143654310472968 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTGCA 25 3.8819722E-5 45.000004 31 TACGCAG 25 3.8819722E-5 45.000004 25 CTAAACG 35 1.2068085E-7 45.000004 1 ACTACCG 25 3.8819722E-5 45.000004 1 CGGGATG 35 1.2068085E-7 45.000004 6 ACGTAGG 50 2.1827873E-11 45.000004 2 AATACGG 25 3.8819722E-5 45.000004 2 CCCGCTG 25 3.8819722E-5 45.000004 35 GGCTACC 25 3.8819722E-5 45.000004 8 AATCCGG 20 7.022628E-4 45.0 2 CGAAAGA 20 7.022628E-4 45.0 29 GGCAACG 20 7.022628E-4 45.0 28 TAACGGG 80 0.0 45.0 3 TAGCCCG 20 7.022628E-4 45.0 1 ATCGTTC 20 7.022628E-4 45.0 26 CTAACGG 40 6.7775545E-9 45.0 2 AATTGGC 20 7.022628E-4 45.0 41 CGCTAAC 40 6.7775545E-9 45.0 38 GTCACGG 20 7.022628E-4 45.0 2 ACGGAAC 20 7.022628E-4 45.0 5 >>END_MODULE