SRR3548612_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548612_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	356755
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2807	0.7868144805258511	No Hit
CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT	2605	0.7301929895866911	TruSeq Adapter, Index 20 (95% over 23bp)
AATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	1548	0.4339112275931662	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCC	1336	0.37448669254810724	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGT	1313	0.36803969110453955	No Hit
AAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	898	0.25171336070973077	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	747	0.20938739471065576	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTT	728	0.2040616109094477	No Hit
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	651	0.18247817129402533	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	619	0.1735084301551485	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	568	0.15921290521506357	No Hit
CGCAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	489	0.13706885677846142	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	438	0.12277333183837648	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCT	429	0.12025059214306737	No Hit
TGCGAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	362	0.10147019663354404	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	358	0.10034897899118443	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCAGT	25	3.8853785E-5	45.000004	24
CGGTTAG	25	3.8853785E-5	45.000004	39
TCGGGTA	25	3.8853785E-5	45.000004	5
CGTTAAG	25	3.8853785E-5	45.000004	1
CCGTAGT	25	3.8853785E-5	45.000004	27
CGTAGTG	25	3.8853785E-5	45.000004	28
TACGATT	25	3.8853785E-5	45.000004	11
AAGCACG	30	2.1612777E-6	45.000004	1
ATAACGG	30	2.1612777E-6	45.000004	2
ACCGTAG	25	3.8853785E-5	45.000004	26
CGGTAGT	35	1.208773E-7	45.000004	12
TAGTGCC	30	2.1612777E-6	45.000004	30
CATCCGG	30	2.1612777E-6	45.000004	2
ACATACG	50	2.1827873E-11	45.000004	17
GGTTAGC	25	3.8853785E-5	45.000004	40
GTAACGG	50	2.1827873E-11	45.000004	2
GTACGAT	25	3.8853785E-5	45.000004	10
ACTATCG	20	7.026739E-4	45.0	1
TAGCGAT	20	7.026739E-4	45.0	45
TAAACGG	20	7.026739E-4	45.0	2