SRR3548611_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548611_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	415763
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3550	0.8538518338572696	No Hit
CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT	2814	0.6768279043589737	TruSeq Adapter, Index 20 (95% over 23bp)
AATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	1703	0.40960835860814937	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCC	1516	0.3646308113035551	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGT	1515	0.3643902896602151	No Hit
AAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	967	0.23258442910985347	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	845	0.20324078862236417	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTT	780	0.18760688180525925	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	763	0.18351801386847796	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	717	0.17245401827483445	No Hit
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	669	0.16090897939451082	No Hit
CGCAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	546	0.13132481726368148	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	465	0.11184256415313532	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCT	441	0.1060700447129735	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	425	0.10222169841953227	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	30	2.1621472E-6	45.000004	1
TTTACGC	30	2.1621472E-6	45.000004	1
CGGCCTA	25	3.886495E-5	45.000004	42
GACGTAT	25	3.886495E-5	45.000004	13
TACGGGT	25	3.886495E-5	45.000004	4
CGCTATC	25	3.886495E-5	45.000004	28
TACGAAG	30	2.1621472E-6	45.000004	1
ACGGACT	25	3.886495E-5	45.000004	5
CTCGCGG	25	3.886495E-5	45.000004	2
GTATAAT	25	3.886495E-5	45.000004	22
ATTGCCA	25	3.886495E-5	45.000004	21
TATACGG	30	2.1621472E-6	45.000004	2
CCGTTCG	25	3.886495E-5	45.000004	17
CGGGTAC	45	3.8380676E-10	45.0	6
AGTCAAC	20	7.028087E-4	45.0	45
CGCATTG	20	7.028087E-4	45.0	1
TTATGTC	20	7.028087E-4	45.0	39
ATTACGG	45	3.8380676E-10	45.0	2
CACGCTA	20	7.028087E-4	45.0	45
ATTCGCG	20	7.028087E-4	45.0	1