SRR3548610_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548610_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	691442
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	25485	3.6857755241943653	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5488	0.7937035933599637	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4511	0.6524046847024045	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2917	0.4218719719079836	No Hit
CTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGCT	1743	0.25208188105437623	No Hit
GACAATGGGGTGAAATCTAACTGTACTGAGGTCCTTTGTTTTTTATATGTA	1066	0.1541705594973982	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	20	7.0313347E-4	45.0	25
CTTCGCA	25	3.8891878E-5	45.0	15
CGTGGTA	20	7.0313347E-4	45.0	15
AGCGTCA	25	3.8891878E-5	45.0	1
ACTATCG	25	3.8891878E-5	45.0	1
CGGCGCA	35	1.2109922E-7	45.0	26
TCGCATC	25	3.8891878E-5	45.0	29
CCTTACG	35	1.2109922E-7	45.0	32
TCGCACT	25	3.8891878E-5	45.0	17
ACACGGA	25	3.8891878E-5	45.0	28
ACCGGAC	25	3.8891878E-5	45.0	14
CAACGTA	20	7.0313347E-4	45.0	22
CTCCGAT	35	1.2109922E-7	45.0	43
CGACGTG	35	1.2109922E-7	45.0	15
CGACGTC	45	3.8380676E-10	45.0	43
CGACGTA	45	3.8380676E-10	45.0	23
TACCACG	25	3.8891878E-5	45.0	1
GAATGCG	25	3.8891878E-5	45.0	40
ACACCCG	25	3.8891878E-5	45.0	1
GACGTAA	20	7.0313347E-4	45.0	22