SRR3548609_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548609_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684919
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	25351	3.7013135859860804	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5418	0.7910424444350355	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4428	0.6464998050864409	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2855	0.41683761145478515	No Hit
CTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGCT	1661	0.24251042824041968	No Hit
GACAATGGGGTGAAATCTAACTGTACTGAGGTCCTTTGTTTTTTATATGTA	1018	0.14863071399683758	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATAGG	60	0.0	45.000004	2
GATACGA	25	3.8891485E-5	45.000004	8
CCTTACG	25	3.8891485E-5	45.000004	32
CGAACTT	25	3.8891485E-5	45.000004	24
CGAACAC	25	3.8891485E-5	45.000004	12
TCCGATC	25	3.8891485E-5	45.000004	15
ATTACTC	30	2.1642118E-6	45.000004	29
ATTACGA	25	3.8891485E-5	45.000004	40
TTACTCG	30	2.1642118E-6	45.000004	30
TACGGTG	30	2.1642118E-6	45.000004	28
TACGGCA	25	3.8891485E-5	45.000004	35
CGACAAT	25	3.8891485E-5	45.000004	19
TCTAGCG	25	3.8891485E-5	45.000004	1
AATGCGT	30	2.1642118E-6	45.000004	41
AATGCGC	50	2.1827873E-11	45.000004	14
CCCGTAA	25	3.8891485E-5	45.000004	19
TACGCGG	50	2.1827873E-11	45.000004	2
CCGTAAC	25	3.8891485E-5	45.000004	20
CGTAGCG	100	0.0	45.000004	1
TACCTAC	30	2.1642118E-6	45.000004	20